Gene detail

Detail information of GWHGAAZE003366

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004240865.1	2.5829E-139	PREDICTED: transcription factor RF2b-like isoform X2 [Solanum lycopersicum]
Swissprot	tr\|Q6S4P4\|RF2B_ORYSJ	2E-88	Transcription factor RF2b
trEMBL	tr\|M1BDU8\|M1BDU8_SOLTU	1E-135	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400042946}
TAIR10	AT2G40620.1	4E-77	Basic-leucine zipper (bZIP) transcription factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	96641559	96644503	-
GWHAAZE00000001	mRNA	96641559	96644503	-
GWHAAZE00000001	exon	96644248	96644503	-
GWHAAZE00000001	exon	96644012	96644123	-
GWHAAZE00000001	exon	96642746	96642878	-
GWHAAZE00000001	exon	96642064	96642148	-
GWHAAZE00000001	exon	96641559	96641884	-
GWHAAZE00000001	CDS	96644248	96644503	-
GWHAAZE00000001	CDS	96644012	96644123	-
GWHAAZE00000001	CDS	96642746	96642878	-
GWHAAZE00000001	CDS	96642064	96642148	-
GWHAAZE00000001	CDS	96641559	96641884	-

Transcript Sequence
>GWHTAAZE003372 ATGCAGGATCCATCATCAAATCCAAAGGGATCCAATGCGACTTCGTTCGCAAACCACCACCAGAGTCCATTCAGGCCCTCGCACCACCGGCGGGCCCACTCGGAGGTAAACTTCCGGCTGCCGGACGACCTAGATCTGGTGTCCGACCCCTTCGATGCGCCGTCCGGGAGTTTCGAAGAGATGGGATCGGAGGACGACCTGTTCAGCACTTACATGGACATGGAGAAGCTTGGATCCAACAACTTAAACGACTCCGTGGATAGTTCGAGTAGTAGTCTGTTTAGCAGTGAGAGTATAGAGGCTAAGAAGGCAATGGCTCCTGATAAGCTCGCTGAGTTGTGGACTCTTGATCCCAAGCGCGCTAAGAGGATTTTGGCAAATAGGCAGTCTGCTGCTCGTTCAAAAGAGAGAAAGGCACGCTATATAATTGAACTTGAGAGAAAAGTTCAAACCCTTCAAACAGAAGCAACCACTCTTTCTGCACAACTCACGCTCTTCCAGAGAGATACAACGGGTCTGTCAAGTGAAAACTCAGAGCTTAAACTCCGTTTACAGGCTATGGAACAACAAGCTCATCTACGTGATGCCCTGAATGAAGCACTGAAGCAAGAAGTTGATAGGCTCAGAGTTGAGACCGGAGAACTAGCAACTCATTCAGATGCATACGATTTGGGGATGCACCATGTTCCTTATCACCAATCTGCCTTCTTCGATCACCCGAACGGACAAATCCATCGGTTCAATCCCTTCCAGTCAAGCACAGCAACTCACCAGCATCATATGGTTGCAGGTGCACATGCACAGGATCCCCTTGGTCGTTTTCAGGGGCTGGATATCAGTAGCAGAGGCTCTCACCCTGTCAAGTCCGAAGGACCTTCTGCTTCGGCCAGTGAAAGCAGCAGTACATTTTGA

Network for GWHGAAZE003366

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00170.22	bZIP_1	119	174	1.70E-08

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bZIP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.775
	SRR3591706	second leaf	11.824
	SRR3591707	mature leaf	2.733
	SRR3591708	Shoot apex	12.379
	SRR3591709	Stem	5.637
	SRR3591710	White floral bud	5.347
	SRR3591711	White flower	2.122
	SRR3591712	Green floral bud	9.096
	SRR3591713	Yellow flower	0.577
SRP173429	SRR8316895	Juvenile bud stage	6.618
	SRR8316896	Juvenile bud stage	7.039
	SRR8316897	Juvenile bud stage	4.580
	SRR8316894	Third green stage	4.693
	SRR8316900	Third green stage	16.251
	SRR8316901	Third green stage	17.345
	SRR8316898	Complete white stage	2.386
	SRR8316899	Complete white stage	20.774
	SRR8316903	Complete white stage	6.962
	SRR8316902	Silver flowering stage	0.152
	SRR8316904	Silver flowering stage	0.679
	SRR8316905	Silver flowering stage	0.307
	SRR8316906	Gold flowering stage	0.239
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.188
SRP132670	SRR6706286	Control	10.781
	SRR6706287	Light intensity 50%	11.962
	SRR6706288	Light intensity 20%	12.419
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.652
	CNS0095593	Slightly white alabastrum(diploid) 2	10.534
	CNS0095594	Slightly white alabastrum(diploid) 3	6.103
	CNS0095595	Whole white alabastrum(diploid) 2	6.979
	CNS0095596	Whole white alabastrum(diploid) 3	6.354
	CNS0095597	Whole white alabastrum(diploid) 4	6.079
	CNS0095598	Silvery flower (diploied) 1	3.366
	CNS0095599	Silvery flower (diploied) 2	3.187
	CNS0095600	Silvery flower (diploied) 3	1.606
	CNS0095601	Golden flower (diploid) 1	2.816
	CNS0095602	Golden flower (diploid) 2	3.273
	CNS0095603	Golden flower (diploid) 3	2.322
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.805
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.707
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.896
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.919
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.562
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.539
	CNS0095610	Silvery flower (diploied) 1	1.377
	CNS0095611	Silvery flower (diploied) 2	0.758
	CNS0095612	Silvery flower (diploied) 3	1.894
	CNS0095613	Golden flower (tetraploid) 1	0.114
	CNS0095614	Golden flower (tetraploid) 2	0.424
	CNS0095615	Golden flower (tetraploid) 3	1.356
CRA001975	CRR073297	Stem 1	13.501
	CRR073298	Stem 2	14.474
	CRR073299	Stem 3	10.871
	CRR073300	Leaf 1	27.859
	CRR073301	Leaf 2	27.258
	CRR073302	Leaf 3	20.895
	CRR073303	Juvenile bud 1	18.628
	CRR073304	Juvenile bud 2	14.416
	CRR073305	Juvenile bud 3	35.832
	CRR073306	Third green 1	0.434
	CRR073307	Third green 2	0.479
	CRR073308	Third green 3	0.668
	CRR073309	Second white 1	0.349
	CRR073310	Second white 2	0.261
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	5.089
	CRR073316	Gold flowering 2	4.898
	CRR073317	Gold flowering 3	5.046
	CRR073318	Tawny withering 1	11.933
	CRR073319	Tawny withering 2	7.529
	CRR073320	Tawny withering 3	11.655