Gene detail

Detail information of GWHGAAZE003405

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI38579.3	2.6598E-158	unnamed protein product [Vitis vinifera]
COG	NP_295256.1	5E-12	hypothetical protein DR_1533
Swissprot	tr\|O82175\|SUVH5_ARATH	1E-133	Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5
trEMBL	tr\|F6I2M3\|F6I2M3_VITVI	4E-158	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB61190.1}
TAIR10	AT2G35160.1	1E-106	SU(VAR)3-9 homolog 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	97297445	97299253	+
GWHAAZE00000001	mRNA	97297445	97299253	+
GWHAAZE00000001	exon	97297445	97297693	+
GWHAAZE00000001	exon	97297758	97297987	+
GWHAAZE00000001	exon	97298071	97299253	+
GWHAAZE00000001	CDS	97297445	97297693	+
GWHAAZE00000001	CDS	97297758	97297987	+
GWHAAZE00000001	CDS	97298071	97299253	+

Transcript Sequence
>GWHTAAZE003411 ATGGTCACAAACAAGGGCGATGATGGAGCCACAAGTGTGACTAAAAGATCGAATGGTAATACTGAAGCTGAAAATGGAACTGGCTTGGTGATGCATTCACAAGGAGCTGAATCGTTTGATTTGGTGCCTTCATTTGGCAATGGTGTAGCTGCGAAGGACAGAGGAAAATGGCTCTGTGATCCTGCTTTCTCTGAAGCTACTCATGGAAACAAGCGACAGAAATCTGGGTTTGGGAGACAGTGTCTGATGGCAGTTGTTAGTCGCAATAAAGTGAGGGAAGCTCTAAATCTGTTTGAAGAGATATATGAAAAGCTTGCTAAGGAAAATAAAGCGAAACCGGACAAACAAGGAAAGGGGGCTTGGCCTATTCTTGTTGAAGCAGCCGAGGAGCTTAGAAAACAGCACAAATGGGTTAATACAGATGAGCATTTCTTGGGAGCTGTTCCTGGTGTTGAAGTTGGTGACGGTTTAACTTCAGGCATTGTGGAGTCTGGTCGTTATGCAAACAAAACAGGATCGCCCGATAAATTGATTTACTCCGGCCAAGGTGGAAATCCGGCCGTCGCTTGTAAGAAACTTGAAGATCAAAAACTCGAACGAGGTAACCTTGCCTTAAAGAATAGCATGGATGTACGATCTCCAGTTAGGGTTATCCGAAGTTACCAAGCTTCGAAGGCATCTAGTCCAAGGAGCCCCAGTAGTGAGAAAAAAACGTATATTTACGATGGGCTCTACATTGTGACCAAGTGTTGGCAAGAAAGGGGGCATTATGGCAAACTAGTATTCATGTTTCAATTGGAGAGAATCAAAGGGCAGCCAGAACTTGCTCCATTTGAACCTTCTCTGATTGAACTTGCTCTGCTTAGAGTGAGCCAATCAAGAAAATCTAAAGAGTGCAACGACCACTGCGTGGTAGATGATATTTCTCAAGGGAAAGAGAAGAACACAATCCGTGCTTTGAATGCCATTGATGATGAGAAGCCGCCAAGTTTTAAGTACATAACTGATATGATATATCCGGAGCTGATTGACTTTTCTATGCCAAGAAGTTGTGATTGTGTTGAAGGTTGCTCGGATTTTGAGCAATGTTCTTGTGTGGTCAAGAATGGCGGTGAGCTTCCTTTTAAGGGCAATGGTGCCATTGTTAAAGCAAAGCCCATTATTTATGAGTGTGGTCCACTTTGCAAGTGCCCACCTTTGTGCAAGAATAGAGTTAGCCAACGAGGAGTTCAATATAAACTAGAGATCTTCAAGACCGAATCAAGGGGATGGGGCGTTAGATCCCAAAGCTTTATCTCAGAAGGGAGATTTATATGCGAATATGCAGGGGAGGTTCTTCGAGACAACAAAGCCGTTAAAGATGAGTATTCAATGGACAATGGGACTAACTTTCACTGTTTTCAAGAAGGGAGCAGTGGGTTTACGATTGATGCGACGCATTTTGGTAATGTAGGAAGGTTTATCAGGCATAGTTGCACGCCGAATTTGTATGTCCAAAATGTGTTGTATGATCATGAGGATGAGAGAATGACTCGCATAATGCTATTTTCAACCAAGAACATACCTCCTTTGCGAGAGTTGACTTGCAATTTCAACTACAAGACGGATCAAGTTGGGAATGGCAATATCAAGAAGGATTGTAGTGGGAAGGTTTTATTTTGA

Network for GWHGAAZE003405

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02182.18	SAD_SRA	160	272	1.50E-29
PF05033.17	Pre-SET	308	404	8.00E-18
PF00856.29	SET	423	531	1.40E-16

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SET

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0034968	biological_process	histone lysine methylation
GO:0005634	cellular_component	nucleus
GO:0008270	molecular_function	zinc ion binding
GO:0018024	molecular_function	histone-lysine N-methyltransferase activity
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.390
	SRR3591706	second leaf	0.348
	SRR3591707	mature leaf	0.070
	SRR3591708	Shoot apex	3.987
	SRR3591709	Stem	0.505
	SRR3591710	White floral bud	0.411
	SRR3591711	White flower	0.481
	SRR3591712	Green floral bud	1.001
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.974
	SRR8316896	Juvenile bud stage	1.138
	SRR8316897	Juvenile bud stage	1.514
	SRR8316894	Third green stage	0.278
	SRR8316900	Third green stage	0.313
	SRR8316901	Third green stage	0.282
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.229
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.010
	SRR8316906	Gold flowering stage	0.024
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.110
	SRR6706287	Light intensity 50%	0.147
	SRR6706288	Light intensity 20%	0.157
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.729
	CNS0095593	Slightly white alabastrum(diploid) 2	0.866
	CNS0095594	Slightly white alabastrum(diploid) 3	1.548
	CNS0095595	Whole white alabastrum(diploid) 2	0.800
	CNS0095596	Whole white alabastrum(diploid) 3	0.488
	CNS0095597	Whole white alabastrum(diploid) 4	1.107
	CNS0095598	Silvery flower (diploied) 1	1.265
	CNS0095599	Silvery flower (diploied) 2	1.712
	CNS0095600	Silvery flower (diploied) 3	0.165
	CNS0095601	Golden flower (diploid) 1	0.468
	CNS0095602	Golden flower (diploid) 2	0.696
	CNS0095603	Golden flower (diploid) 3	0.699
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.938
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.550
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.072
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.242
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.570
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.602
	CNS0095610	Silvery flower (diploied) 1	0.310
	CNS0095611	Silvery flower (diploied) 2	0.189
	CNS0095612	Silvery flower (diploied) 3	0.372
	CNS0095613	Golden flower (tetraploid) 1	0.001
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.400
	CRR073298	Stem 2	0.433
	CRR073299	Stem 3	0.491
	CRR073300	Leaf 1	0.203
	CRR073301	Leaf 2	0.096
	CRR073302	Leaf 3	0.025
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.001
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.042
	CRR073316	Gold flowering 2	0.032
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.312
	CRR073319	Tawny withering 2	0.086
	CRR073320	Tawny withering 3	0.571