Gene detail

Detail information of GWHGAAZE003419

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ADP37427.1	5.80243E-64	ethylene-responsive-element-binding factor 12 [Petunia x hybrida]
Swissprot	tr\|Q40478\|ERF5_TOBAC	2E-65	Ethylene-responsive transcription factor 5
trEMBL	tr\|E3VVS1\|E3VVS1_PETHY	2E-64	Ethylene-responsive-element-binding factor 12 {ECO:0000313\|EMBL:ADP37427.1}
TAIR10	AT5G51190.1	5E-38	Integrase-type DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	97585391	97586122	+
GWHAAZE00000001	mRNA	97585391	97586122	+
GWHAAZE00000001	exon	97585391	97586122	+
GWHAAZE00000001	CDS	97585391	97586122	+

Transcript Sequence
>GWHTAAZE003425 AATACTCTTTCTTATTCTTCACCTTCGTGCTCTGATTCCATCAATTCTGCTGATTACTATAATCTTCCCCTTCACTCTAAACTCCTCGAATCCTCCAACTCAATTCATCAATTTCACTTCAACTCTTCAAACCCAGACCCCACGATTGGCTCGAAAACATCAAAACAAAAGAGCTTCAACGATCGTAAGCCCTCCCTCAGTATTTCTATCCCTCAGGTAAACAAAATTCCCTCCTCCGTAAAACCATCTCACCCCAAACTGCCCGATTCCCTCGACAAGAGGCACTACAGGGTGTTCAGACAACGGCCCTGGGGGAAATACGCCGCCGAGATTCGGGATCCTAATCGCAAAGGATCTAGGGTTTGGCTCGGGACTTTTGAAACTGCCGTGGAAGCCGCTAAGGCCTACGACAGGGCCGCGTTTAAGCTCCGTGGAAGTAAGGCGATAATTAATTTCCCGCTTGAAATTGAGAATCCTCCGGTAAGTGAAGTTCCGGTCAACGGTTGCAGGAAGAGAGGGAGAGAAGTGGAGATTGTTCAGGAGGAGATTGAAAGTAAAGCTGTGAAAAAGGAGGAGTCGGCCGCTAGTCCGTTAACGCCGTCTAATTGGACGGCAGTATGGGATTGTGGTCAAGGAAATGGTGGTATATTTGAGGTACCTCCGTTATCGCCGTTATCGCCGTATCTGGGATGTCATAATGGTTACCTCAGAGATTTCAATAGCGTTTGCTGA

Network for GWHGAAZE003419

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	100	145	3.90E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-ERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.179
	SRR3591706	second leaf	4.821
	SRR3591707	mature leaf	5.430
	SRR3591708	Shoot apex	14.611
	SRR3591709	Stem	48.884
	SRR3591710	White floral bud	25.589
	SRR3591711	White flower	31.246
	SRR3591712	Green floral bud	33.990
	SRR3591713	Yellow flower	29.793
SRP173429	SRR8316895	Juvenile bud stage	55.394
	SRR8316896	Juvenile bud stage	41.302
	SRR8316897	Juvenile bud stage	18.458
	SRR8316894	Third green stage	25.068
	SRR8316900	Third green stage	58.645
	SRR8316901	Third green stage	85.995
	SRR8316898	Complete white stage	3.237
	SRR8316899	Complete white stage	101.329
	SRR8316903	Complete white stage	4.280
	SRR8316902	Silver flowering stage	2.704
	SRR8316904	Silver flowering stage	5.603
	SRR8316905	Silver flowering stage	3.986
	SRR8316906	Gold flowering stage	23.922
	SRR8316907	Gold flowering stage	16.057
	SRR8316908	Gold flowering stage	31.034
SRP132670	SRR6706286	Control	35.947
	SRR6706287	Light intensity 50%	41.725
	SRR6706288	Light intensity 20%	37.284
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	28.094
	CNS0095593	Slightly white alabastrum(diploid) 2	50.783
	CNS0095594	Slightly white alabastrum(diploid) 3	46.168
	CNS0095595	Whole white alabastrum(diploid) 2	25.002
	CNS0095596	Whole white alabastrum(diploid) 3	16.242
	CNS0095597	Whole white alabastrum(diploid) 4	31.121
	CNS0095598	Silvery flower (diploied) 1	28.764
	CNS0095599	Silvery flower (diploied) 2	30.276
	CNS0095600	Silvery flower (diploied) 3	37.636
	CNS0095601	Golden flower (diploid) 1	49.511
	CNS0095602	Golden flower (diploid) 2	42.763
	CNS0095603	Golden flower (diploid) 3	41.906
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.387
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.338
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.679
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.504
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.110
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.172
	CNS0095610	Silvery flower (diploied) 1	8.345
	CNS0095611	Silvery flower (diploied) 2	3.509
	CNS0095612	Silvery flower (diploied) 3	11.870
	CNS0095613	Golden flower (tetraploid) 1	9.933
	CNS0095614	Golden flower (tetraploid) 2	10.632
	CNS0095615	Golden flower (tetraploid) 3	3.161
CRA001975	CRR073297	Stem 1	22.982
	CRR073298	Stem 2	40.703
	CRR073299	Stem 3	34.103
	CRR073300	Leaf 1	155.571
	CRR073301	Leaf 2	167.667
	CRR073302	Leaf 3	110.758
	CRR073303	Juvenile bud 1	159.850
	CRR073304	Juvenile bud 2	146.902
	CRR073305	Juvenile bud 3	272.553
	CRR073306	Third green 1	10.915
	CRR073307	Third green 2	7.852
	CRR073308	Third green 3	16.646
	CRR073309	Second white 1	2.521
	CRR073310	Second white 2	2.810
	CRR073311	Second white 3	3.075
	CRR073312	Silver flowering 1	8.070
	CRR073313	Silver flowering 2	7.527
	CRR073314	Silver flowering 3	9.714
	CRR073315	Gold flowering 1	24.225
	CRR073316	Gold flowering 2	20.336
	CRR073317	Gold flowering 3	45.547
	CRR073318	Tawny withering 1	44.215
	CRR073319	Tawny withering 2	39.062
	CRR073320	Tawny withering 3	38.347