Gene detail

Detail information of GWHGAAZE003523

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002278915.1	0	PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Vitis vinifera]
COG	YP_001958455.1	4E-14	hypothetical protein Aasi_1435
Swissprot	tr\|Q4FE45\|XB33_ARATH	0	E3 ubiquitin-protein ligase XBAT33
trEMBL	tr\|D7TMU6\|D7TMU6_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI31819.3}
TAIR10	AT5G07270.1	0	XB3 ortholog 3 in Arabidopsis thaliana

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	99417009	99420785	+
GWHAAZE00000001	mRNA	99417009	99420785	+
GWHAAZE00000001	exon	99417009	99417185	+
GWHAAZE00000001	exon	99417271	99417330	+
GWHAAZE00000001	exon	99417574	99417645	+
GWHAAZE00000001	exon	99417768	99417952	+
GWHAAZE00000001	exon	99418347	99418461	+
GWHAAZE00000001	exon	99418790	99418836	+
GWHAAZE00000001	exon	99418949	99419092	+
GWHAAZE00000001	exon	99419640	99419731	+
GWHAAZE00000001	exon	99420247	99420785	+
GWHAAZE00000001	CDS	99417009	99417185	+
GWHAAZE00000001	CDS	99417271	99417330	+
GWHAAZE00000001	CDS	99417574	99417645	+
GWHAAZE00000001	CDS	99417768	99417952	+
GWHAAZE00000001	CDS	99418347	99418461	+
GWHAAZE00000001	CDS	99418790	99418836	+
GWHAAZE00000001	CDS	99418949	99419092	+
GWHAAZE00000001	CDS	99419640	99419731	+
GWHAAZE00000001	CDS	99420247	99420785	+

Transcript Sequence
>GWHTAAZE003529 ATGGGGAATTCGTTCGGGTGCTCGGCGTCGGGAGAGAGGCTAGTATCGGCGGCGAGGGATGGAGATTTTGTGGAAGCAAAGATGTTACTTGATTGTAACCCTTGCCTCGCCAAATACTCTACCTTCGGTGGCCTCAACTCTCCTCTTCACTTCGCCTCTGCTAAAGGCCACACCGAGATTGTTGCACTCTTACTTGACAATGGAGCTGATGCCAATTCCAGAAATTATTGTGGTCAGACGGCCTTGATGCAAGCCTGTCGATATGGGCACTGGGAAGTTGTTCAAACTCTTCTGCTCTTTAGATGCAATGTTACAAGAGCAGACTATCTTAGTGGAAGAACAGCTCTCCATTTTGCTGCCGTGAATGGTCATGTAAGATGCATAAGACTTGTGGTCGCTGATTTTGTTCCAAGTTCACGATTTGAATCTGTAAATGTCCAAACGAATGGTCATGCAGTTGACAATTCCACTAGCAAAAACAAACACGACCCAAGTGCACTAGCAAAATTTGTAAACAAGGCAGCTGATGGTGGTATCACTGCTCTTCACATGGCTGCATTGAATGGGTATTTTGATTGTGTACAGCTCCTTCTTGATCTTCATGCAAATATCCTTCTTGCAAGAGGCGCCAGTCGGATGACATTAAACTGCAATGGGTGGCTCCCTCTTGATGTTGCGAGAATGTGGGGGCGTCATTGGCTTGAGCCACTGCTGGCACCCAATTCTGAATTGGCAATTCCAGTGTTTCCACTCTCCAGTTATTTGTCCTTGCCTCTCATGAGTGTACTTAACATAGCAAGAGAATGTGGGTTGCAGTCCTCTGCCACCTCTTCGGATGACACTGATATCTGTGCTGTTTGCTTGGAGAGATCATGTACTGTAGCTGCTGAAGGTTGCAAGCATGAACTTTGTGTAAAATGTGCACTTTACCTTTGCTCAACAAGCAACATCCCATCTGAATTGGTAGGTCCACCTGGGTCCATCCCTTGCCCTCTTTGCCGACATGGCATCGTTTCGTTTGCCAAATTGCCCGGCTCTTTGCCCAAGGAAACAAAATTACACCTTTCCCTTAGCCTATGTACCCCATGCATGCTTCACCCTCGAGAACCAGACCGGTCAACACCAGCTTGTACACCTGAGATTCGAAGGAACCGCGTGGCTTCTGTTTCTTCAGATATTTTTTGCCCAGTCACTTGTAGCCCATTTCCTTCAGTTGCCATTCCTTTATGCACATGTAATGATGGACCGTGCCCACCTTTCGAACATAGAGAAAATGAAACATTAGATGAATCTCCTCATCGTTCACAATCTGCATCGGTAGACCAGGACAAAGTTGCGATGAGACTGGAGAAAACTAGCTGCTCAAGCATGTTCTGGGGAAGAAGAAGCTGCAGCAGAGAGCAGCAGTGCAACTCCGAAATAAATGCTTGA

Network for GWHGAAZE003523

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0025	GO:0015914 phospholipid transport GOslim:biological_process GO:0140326 ATPase-coupled intramembrane lipid transporter activity GOslim:molecular_function

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12796.8	Ank_2	49	132	3.60E-17
PF12796.8	Ank_2	170	231	3.70E-06

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.210
	SRR3591706	second leaf	13.033
	SRR3591707	mature leaf	15.345
	SRR3591708	Shoot apex	19.887
	SRR3591709	Stem	39.382
	SRR3591710	White floral bud	14.893
	SRR3591711	White flower	17.868
	SRR3591712	Green floral bud	14.655
	SRR3591713	Yellow flower	10.015
SRP173429	SRR8316895	Juvenile bud stage	13.234
	SRR8316896	Juvenile bud stage	14.015
	SRR8316897	Juvenile bud stage	7.600
	SRR8316894	Third green stage	7.057
	SRR8316900	Third green stage	14.432
	SRR8316901	Third green stage	14.494
	SRR8316898	Complete white stage	5.755
	SRR8316899	Complete white stage	26.605
	SRR8316903	Complete white stage	7.635
	SRR8316902	Silver flowering stage	4.342
	SRR8316904	Silver flowering stage	4.829
	SRR8316905	Silver flowering stage	2.929
	SRR8316906	Gold flowering stage	9.024
	SRR8316907	Gold flowering stage	7.976
	SRR8316908	Gold flowering stage	8.125
SRP132670	SRR6706286	Control	15.143
	SRR6706287	Light intensity 50%	16.132
	SRR6706288	Light intensity 20%	15.804
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.973
	CNS0095593	Slightly white alabastrum(diploid) 2	12.251
	CNS0095594	Slightly white alabastrum(diploid) 3	9.804
	CNS0095595	Whole white alabastrum(diploid) 2	9.756
	CNS0095596	Whole white alabastrum(diploid) 3	6.125
	CNS0095597	Whole white alabastrum(diploid) 4	6.881
	CNS0095598	Silvery flower (diploied) 1	18.269
	CNS0095599	Silvery flower (diploied) 2	12.476
	CNS0095600	Silvery flower (diploied) 3	16.076
	CNS0095601	Golden flower (diploid) 1	11.963
	CNS0095602	Golden flower (diploid) 2	18.452
	CNS0095603	Golden flower (diploid) 3	18.629
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.528
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.076
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.366
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.313
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.163
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.092
	CNS0095610	Silvery flower (diploied) 1	8.673
	CNS0095611	Silvery flower (diploied) 2	14.903
	CNS0095612	Silvery flower (diploied) 3	8.356
	CNS0095613	Golden flower (tetraploid) 1	4.084
	CNS0095614	Golden flower (tetraploid) 2	8.225
	CNS0095615	Golden flower (tetraploid) 3	5.801
CRA001975	CRR073297	Stem 1	24.413
	CRR073298	Stem 2	22.284
	CRR073299	Stem 3	23.296
	CRR073300	Leaf 1	22.953
	CRR073301	Leaf 2	30.095
	CRR073302	Leaf 3	20.633
	CRR073303	Juvenile bud 1	19.820
	CRR073304	Juvenile bud 2	12.074
	CRR073305	Juvenile bud 3	29.116
	CRR073306	Third green 1	4.725
	CRR073307	Third green 2	4.606
	CRR073308	Third green 3	3.878
	CRR073309	Second white 1	4.315
	CRR073310	Second white 2	4.318
	CRR073311	Second white 3	3.502
	CRR073312	Silver flowering 1	3.650
	CRR073313	Silver flowering 2	3.756
	CRR073314	Silver flowering 3	4.048
	CRR073315	Gold flowering 1	13.361
	CRR073316	Gold flowering 2	20.595
	CRR073317	Gold flowering 3	13.516
	CRR073318	Tawny withering 1	45.117
	CRR073319	Tawny withering 2	35.641
	CRR073320	Tawny withering 3	53.158