Gene detail

Detail information of GWHGAAZE003617

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009794471.1	0	PREDICTED: plastidial pyruvate kinase 2 [Nicotiana sylvestris]
COG	YP_003690565.1	5E-140	pyruvate kinase
Swissprot	tr\|Q9FLW9\|PKP2_ARATH	0	Plastidial pyruvate kinase 2 (Precursor)
trEMBL	tr\|A0A067EQP7\|A0A067EQP7_CITSI	0	Pyruvate kinase {ECO:0000256\|RuleBase:RU000504}
TAIR10	AT5G52920.1	0	plastidic pyruvate kinase beta subunit 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	101070413	101077090	+
GWHAAZE00000001	mRNA	101070413	101077090	+
GWHAAZE00000001	exon	101070413	101070667	+
GWHAAZE00000001	exon	101072158	101072418	+
GWHAAZE00000001	exon	101072534	101072699	+
GWHAAZE00000001	exon	101073181	101073315	+
GWHAAZE00000001	exon	101073408	101073518	+
GWHAAZE00000001	exon	101073635	101073723	+
GWHAAZE00000001	exon	101074212	101074274	+
GWHAAZE00000001	exon	101075035	101075210	+
GWHAAZE00000001	exon	101075290	101075392	+
GWHAAZE00000001	exon	101075516	101075664	+
GWHAAZE00000001	exon	101076202	101076310	+
GWHAAZE00000001	exon	101076770	101077090	+
GWHAAZE00000001	CDS	101070413	101070667	+
GWHAAZE00000001	CDS	101072158	101072418	+
GWHAAZE00000001	CDS	101072534	101072699	+
GWHAAZE00000001	CDS	101073181	101073315	+
GWHAAZE00000001	CDS	101073408	101073518	+
GWHAAZE00000001	CDS	101073635	101073723	+
GWHAAZE00000001	CDS	101074212	101074274	+
GWHAAZE00000001	CDS	101075035	101075210	+
GWHAAZE00000001	CDS	101075290	101075392	+
GWHAAZE00000001	CDS	101075516	101075664	+
GWHAAZE00000001	CDS	101076202	101076310	+
GWHAAZE00000001	CDS	101076770	101076877	+
GWHAAZE00000001	three_prime_UTR	101076878	101077090	+

Transcript Sequence
>GWHTAAZE003623 ATGGCTCAGGTGGTAGCCACTCGGACGATTCACAGTTGGTTTGCTTGCCCTACTCCTACCTCCTCATCTCTTCAATTTGATTATTATAATAAACTCAAGCCTCCTTATTGTATTACTTTTCCTTCCAAATTACAATCTCCCAATGAACGAAAGAGTGTCCAAGCTCTTCGAGTTAGGATGCCCATTACTGCCAAGACATCTTCAAGCGCTGAGCCCCAACTCATTCCAGTCTCTCCTCAAGACGTACCAAAAAAGGCAGAAGAGCAAATTCATAAGTTACAGGAACTTCAGCAGCTTGGGGACACGTCAGTGAGTATGTGGTCTAAGCCTACAGTTAAGCGCAAGACAAAGATTGTTTGCACAATTGGTCCTTCAACAAACACCAGGGAAATGATATGGAAGCTGGCCGAGGCTGGAATGAATGTAGCTAGAATGAACATGTCCCATGGAGACCATGCATCTCATCAGAAAGTTATTGATTTGGTTAAGGAATATAATGCTCAGTCCAAAGACAATGGTCCCGAGGTTAGGAGTGGGGACTTGCCTCAACCAGTCATGTTATCAAGCGGCCAAGACTTCACTTTCACCATTCAAAGAGGAGTTGGCACTGCTAACTGTGTCAGCGTTAACTATGACGATTTTGTGAATGATGTAGAAGTGGGCGATATGCTTCTTGTTGATGGTGGTATGATGTCATTCTTGGTCAAATCCAAGACAGAAGATTCAGTGAAATGTGAAGTTGTTGATGGTGGAGAGCTCAAATCTCGACGACATCTAAACGTTCGAGGAAAAAGTGCTACACTGCCATCCATCACTGACAAGGATTGGGACGACATCAAATTTGGAGTGGATAACCAAGTTGACTTCTATGCTGTTTCCTTTGTCAAAGATGCAGCAGTGGTCCATGAATTGAAGAATTATCTACGAAGCTATGGTGCGGATATACATGTTATTGTCAAAATTGAAAGTGCAGACTCTATACCAAATTTGCATTCAATTATTACAGCCTCTGATGGGGCAATGGTTGCAAGAGGAGACCTTGGCGCGGAACTGCCTGTCGAGGAGGTTCCACTGTTGCAGGAAGAGATAATACAGATGTGCCGTACCATGGGGAAAGCAGTGATAGTGGCAACAAATATGCTGGAAAGTATGATTGTTCATCCAACACCAACGCGAGCAGAGGTATCAGACATTGCCATTGCTGTTAGAGAGGGTGCTGACGCTGTTATGCTTTCTGGAGAAACTGCTCACGGAAAATTTCCACTAAAAGCTGTCAAAGTAATGCACACAGTTTCATTACGGACCGAAGCAACCATAGTTGGTGAGGAAACACCATCTGATATTGGCCGAGCCTTTAAGAACCGCATGAGCGAAATGTTTGCATATCATGCTACAATGATGTCTAACACTCTTGGAACCCCAATTGTAGTTTTCACCAGAAGTGGTTTCATGGCCATCCTGCTGAGCCATTACCGACCTTCTGGCACTGTATTTGCCTTTACAAACGATAAAAGGGTACAACAGAGATTGGCTTTATATCAAGGAGTTTCCCCGATATATATGCAGTTCTTAGATGATGCTGAAGAGACCTTCGAAAATGCGTTGTCCACTTTGCAGACACAGGGAATGGTGAAGGTGGGAGAACAGGTAGCTCTTGTTCAAAGTGGGAGAAAGCCCATTTGGCGGTTTCAATCAACTCACAATATCCAGCTCAGGACTATTTAAAGATCAGAATAGAATCTTTCTTCCCAGCTCCATTACCCTGTCTTCCAGTTAGCTTTATTATTCACCAGAAACATGTATTTGTTATGATAATTATATATTTCTTTACTTCTTAGGTGATAAGGGACTATTGTTACTTCTTTACATCAATTTTCCTCTGTTATTAAATCATTCAGGACGGAAGTTTTGTATTTACTTACATGGAATTTTCTTGTA

Network for GWHGAAZE003617

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00224.22	PK	114	440	4.70E-108
PF02887.17	PK_C	464	554	3.30E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00873	PK, pyk	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Glycolysis / Gluconeogenesis	map00010
		Pyruvate metabolism	map00620
		Purine metabolism	map00230
		Glucagon signaling pathway	map04922

Gene Ontology

GO term	Ontology	Name
GO:0006096	biological_process	glycolytic process
GO:0003824	molecular_function	catalytic activity
GO:0004743	molecular_function	pyruvate kinase activity
GO:0000287	molecular_function	magnesium ion binding
GO:0030955	molecular_function	potassium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	67.472
	SRR3591706	second leaf	325.978
	SRR3591707	mature leaf	47.586
	SRR3591708	Shoot apex	157.050
	SRR3591709	Stem	16.922
	SRR3591710	White floral bud	104.911
	SRR3591711	White flower	156.531
	SRR3591712	Green floral bud	138.193
	SRR3591713	Yellow flower	208.690
SRP173429	SRR8316895	Juvenile bud stage	51.360
	SRR8316896	Juvenile bud stage	53.421
	SRR8316897	Juvenile bud stage	25.036
	SRR8316894	Third green stage	26.101
	SRR8316900	Third green stage	102.916
	SRR8316901	Third green stage	82.011
	SRR8316898	Complete white stage	27.076
	SRR8316899	Complete white stage	68.237
	SRR8316903	Complete white stage	40.655
	SRR8316902	Silver flowering stage	40.919
	SRR8316904	Silver flowering stage	61.028
	SRR8316905	Silver flowering stage	25.466
	SRR8316906	Gold flowering stage	90.110
	SRR8316907	Gold flowering stage	84.741
	SRR8316908	Gold flowering stage	75.871
SRP132670	SRR6706286	Control	81.075
	SRR6706287	Light intensity 50%	108.093
	SRR6706288	Light intensity 20%	135.828
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	46.996
	CNS0095593	Slightly white alabastrum(diploid) 2	45.248
	CNS0095594	Slightly white alabastrum(diploid) 3	42.327
	CNS0095595	Whole white alabastrum(diploid) 2	60.146
	CNS0095596	Whole white alabastrum(diploid) 3	22.959
	CNS0095597	Whole white alabastrum(diploid) 4	42.250
	CNS0095598	Silvery flower (diploied) 1	37.823
	CNS0095599	Silvery flower (diploied) 2	35.260
	CNS0095600	Silvery flower (diploied) 3	41.798
	CNS0095601	Golden flower (diploid) 1	29.044
	CNS0095602	Golden flower (diploid) 2	32.506
	CNS0095603	Golden flower (diploid) 3	32.952
	CNS0095604	Slightly white alabastrum(tetraploid) 1	37.982
	CNS0095605	Slightly white alabastrum(tetraploid) 2	36.191
	CNS0095606	Slightly white alabastrum(tetraploid) 3	121.334
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.312
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.636
	CNS0095609	Whole white alabastrum(tetraploid) 3	71.112
	CNS0095610	Silvery flower (diploied) 1	36.450
	CNS0095611	Silvery flower (diploied) 2	39.823
	CNS0095612	Silvery flower (diploied) 3	64.646
	CNS0095613	Golden flower (tetraploid) 1	26.504
	CNS0095614	Golden flower (tetraploid) 2	37.323
	CNS0095615	Golden flower (tetraploid) 3	45.076
CRA001975	CRR073297	Stem 1	84.037
	CRR073298	Stem 2	82.208
	CRR073299	Stem 3	65.299
	CRR073300	Leaf 1	108.174
	CRR073301	Leaf 2	97.653
	CRR073302	Leaf 3	96.841
	CRR073303	Juvenile bud 1	79.234
	CRR073304	Juvenile bud 2	48.372
	CRR073305	Juvenile bud 3	60.378
	CRR073306	Third green 1	41.707
	CRR073307	Third green 2	36.976
	CRR073308	Third green 3	44.282
	CRR073309	Second white 1	51.311
	CRR073310	Second white 2	71.914
	CRR073311	Second white 3	73.853
	CRR073312	Silver flowering 1	60.968
	CRR073313	Silver flowering 2	45.969
	CRR073314	Silver flowering 3	49.206
	CRR073315	Gold flowering 1	50.460
	CRR073316	Gold flowering 2	63.466
	CRR073317	Gold flowering 3	37.968
	CRR073318	Tawny withering 1	58.727
	CRR073319	Tawny withering 2	35.137
	CRR073320	Tawny withering 3	100.548