Gene detail

Detail information of GWHGAAZE003640

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010662985.1	PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X2 [Vitis vinifera]
COG	YP_001679546.1	glutamate synthase (nadph) small chain
Swissprot	tr\|Q03460\|GLSN_MEDSA	Glutamate synthase [NADH], amyloplastic (Precursor)
trEMBL	tr\|E0CVI4\|E0CVI4_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI23145.3}
TAIR10	AT5G53460.3	NADH-dependent glutamate synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	101464134	101469026	-
GWHAAZE00000001	mRNA	101464134	101469026	-
GWHAAZE00000001	exon	101467908	101469026	-
GWHAAZE00000001	exon	101467452	101467676	-
GWHAAZE00000001	exon	101467086	101467354	-
GWHAAZE00000001	exon	101466565	101466870	-
GWHAAZE00000001	exon	101466165	101466432	-
GWHAAZE00000001	exon	101465144	101465401	-
GWHAAZE00000001	exon	101464134	101465033	-
GWHAAZE00000001	CDS	101467908	101469026	-
GWHAAZE00000001	CDS	101467452	101467676	-
GWHAAZE00000001	CDS	101467086	101467354	-
GWHAAZE00000001	CDS	101466565	101466870	-
GWHAAZE00000001	CDS	101466165	101466432	-
GWHAAZE00000001	CDS	101465144	101465401	-
GWHAAZE00000001	CDS	101464743	101465033	-
GWHAAZE00000001	three_prime_UTR	101464134	101464742	-

Transcript Sequence
>GWHTAAZE003646 ATGTCTCAGCTTGGGCTTCGATCGGTCAATGAGATGATTGGTCGTTCAGATATGCTTGAACTTGATAAAGACCTGATCAAGGACAACCCGAAACTAAAGAATATCGATCTCTCCTTGTTACTTAGACCTGCTGCTGACATCCGGCCCGAAGCTGCCCAGTTTTGCGTACAGAAACAAGATCATGGTTTGGACATGGCCTTAGATCAAAGACTGATTGCTCTCTCCAAACCTGCTTTAGAAAAAGGTGTTCCTGTGTACATTGAAGTGCCAATCTGCAATATAAATCGGGCAGTAGGAACAATGCTTAGTCATGAAGTGACAAAACAATACCGCATGGAAGGTCTTCCTGCGGATACCATCCATATCAAACTCAATGGAAGTGCGGGACAGAGCCTTGGAGCTTTTCTCTGTCCTGGCATCATGCTGGAGCTTGAGGGTGACAGCAATGACTATGTTGGAAAGGGATTATCAGGTGGCAAGATTGTTGTTTATCCTCCAAAAGAAAGCCGGTTTGATCCCAAGGAAAATATCGTGATTGGAAATGTTGCTCTCTATGGGGCGACAAATGGGGAAGCTTATTTTAATGGAATGGCAGCAGAAAGATTTTGTGTACGCAACTCGGGCGCCAAAGCAGTTGTGGAGGGTGTTGGTGATCATGGATGCGAGTACATGACTGGTGGGACTGTTGTTGTACTGGGAAAAACTGGGAGGAATTTCGCTGCTGGAATGAGTGGTGGAATTGCCTATGTTCTTGATGTGGATTCCAATTTCCACTCCAGATGCAATTCTGAACTGGTTGATCTTGATAAAGTCGAAGAAGAGGAGGATATTATGACACTCAGAATGATGATTCAGCAGCACCAGCGACACACAAACAGTCAATTAGCCAAAGAAGTGCTTGCAGACTTTGACAATCTTTTACCAAAATTCATTAAAGTGTTCCCTAGGGATTATAAACGGATTCTTGCCTCCTTGAAAGTAGAGGAAACTGCCAAAAAGGCAGCAGAAAAAGCTGAAAAAGAAGCTGAAGATCAAGAGGAGGCAGAGCTGGTTGAGAAAGATGCTTTTGAAGAGCTTAAGAAGTTAGCGGAGGCATCTCTGAAAGAGAAAGCTACTCAGAATGCACAAGAAGAAAGGGTTGAAGCATTGAAAAGACCGACTCAGGTTGATGATGCCGTCAAGAATCGAGGTTTTATTGCTTATGAGCGAGAGGGCGTTTCATACAGGGATCCTAATGTTCGTATGAATGACTGGAAAGAAGTTATGATAGAGTCAAAACCTGGTCCTCTTCTAAAGACACAGTCAGCCCGCTGTATGGACTGTGGTACACCCTTCTGCCATCAGGAAAACTCTGGATGTCCTCTTGGAAACAAAATACCTGAATTTAACGAGTTAGTGTACCAAAATAGATGGCAAGAAGCATTGGACAGACTTCTAGAGACCAATAACTTCCCAGAATTTACTGGTCGAGTGTGTCCTGCACCGTGTGAAGGCTCTTGTGTGCTTGGTATTATTGAAAATCCTGTATCCATCAAAAGCATTGAGTGCTCTATCATAGACAAGGCTTTTGAGGAGGGATGGATGGTCCCCCGACCTCCCCTCAAGAGAACTGGGAAAAAAGTTGCTATTGTTGGGAGTGGACCTGCTGGCTTGGCTGCTGCCGATCAATTAAATAGAATGGGCCATTCTGTGACGGTGTTTGAACGTGCTGATCGAATTGGGGGCCTTATGGTGTATGGAGTCCCTAACATGAAGGCAGACAAAATTGAAGTAGTTCAAAGGCGGGTTGACCTTATGGCAAAAGAAGGTGTGAATTTTGTGGTTAATGCTAGTGTTGGAAAAGATCCATCCTACTCCCTAGATAGGCTTCGTGCAGACAATGATGCTATTATTTTGGCAGTAGGAGCCACAAAGCCAAGGGACCTTCCTGTTCCTGGACGGGAGCTATCAGGAATCCATTTTGCAATGGAGTTTCTTCACGCAAATACTAAAAGCTTGTTGGATAGCAATCTTGAAGATGGAAATTACATCTCTGCCAAGGGAAAGAAGGTGGTAGTCATTGGGGGAGGCGATACTGGCACAGATTGCATAGGGACTTCTATCCGACACGGTTGCAGTAGTATTATAAATTTGGAGCTTCTCCCTGAGCCACCACGATCTAGGGCTCCTGGAAATCCTTGGCCGCAGTGGCCTCGTGTGTTCCGGGTAGACTATGGCCACCAAGAAGCTGCTACTAAGTTTGGGAAAGACCCAAGGTCGTACGAGGTATTGACTAAGCGGTTTATTGGGGATGAGAATGGGGTTGTAAAGGGACTGGAGTTGGTACGCGTACACTGGGAGAAGGATGCTAGCGGCAAGTTTCAATTCAAGGAAGTTGAGGGTTCAGAGGAGATTATCGGGGCCGACTTAGTCCTACTAGCCATGGGGTTCCTTGGTCCTGAGTCGATGGTAGCGGACAAACTGGGGTTGGAGAAAGACAATAGGTCAAACATAAAGGCAGAGTATGGACGTTTCTCAACGACAGTGGAAGGGGTATTTGCAGCCGGGGACTGTAGGCGGGGCCAATCTCTAGTCGTATGGGCCATCTCAGAAGGTAGACAAGCGGCTTCACAGGTCGACAACTATCTTATGAAAGAGGAGGAACAAGAAGAAATAACTATCGATTCAGTGAGACAAGAGGACGACAGCACCATTAATAGGCAAGGTAGCAGCAAACAACATACAGTTATGTCGTAATATGTTTTCTTATTTAATTATTATACATAGAGAGATGATTTCGACACTGAAGTGGATAACCAACAAGAGGAGCCCTGTCAAGTTCAGAAGGACCGACGAAGTAGTCTATGGCCAATTCTCTACAGTGTTATTCTCTGTTGTAATATCTTGTTTATAACTCTCTTCTTATTTTTGTCTTATTTTCCCATTTGGAGATTAAAGAGTGGTGCTTGTGCTGGCTGAACGAATAATGTACAGATTGTTTTTTTTTCCCTCCAATCGAAATTAGTTTGTGGGTAGTTTTTTTTTCCGCCCCTTTTTTTGGGTCAGTGCAATTAAAAGGTTTCATTTTCTCATTTGGAGATTAAAGGTTTTTTCGAAGCTTCTGCCCTCGTTGCATTAATATATAATCTTAGATCAAAGGATTGCTAGTTGTTTAGTGTAGGTGCTAATTTTTGTTATTCAACTTCAATTTCTTTCCTATTCTGTTGGCGTAGATAAGAATTTAGATGTCTTTCATAAGATTAATGGGAGTCTTTAAACTGCCCAGCTTAATAGAAGATGGAAGAAGAGAATATAATGAATGAAGGCTTAAATTGTATAGCAACAAGTGAGGAGGATTATCATGTC

Network for GWHGAAZE003640

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01493.20	GXGXG	90	276	2.00E-87
PF14691.7	Fer4_20	417	526	1.00E-21
PF07992.15	Pyr_redox_2	539	865	3.10E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00264	GLT1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Biosynthesis of amino acids	map01230
		Nitrogen metabolism	map00910
		Alanine, aspartate and glutamate metabolism	map00250

Gene Ontology

GO term	Ontology	Name
GO:0006537	biological_process	glutamate biosynthetic process
GO:0055114	biological_process	oxidation-reduction process
GO:0016639	molecular_function	oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor
GO:0051536	molecular_function	iron-sulfur cluster binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	62.444
	SRR3591706	second leaf	53.613
	SRR3591707	mature leaf	66.677
	SRR3591708	Shoot apex	69.831
	SRR3591709	Stem	220.242
	SRR3591710	White floral bud	63.948
	SRR3591711	White flower	89.642
	SRR3591712	Green floral bud	49.002
	SRR3591713	Yellow flower	64.079
SRP173429	SRR8316895	Juvenile bud stage	66.294
	SRR8316896	Juvenile bud stage	87.276
	SRR8316897	Juvenile bud stage	28.406
	SRR8316894	Third green stage	28.653
	SRR8316900	Third green stage	60.833
	SRR8316901	Third green stage	70.257
	SRR8316898	Complete white stage	5.443
	SRR8316899	Complete white stage	40.146
	SRR8316903	Complete white stage	18.745
	SRR8316902	Silver flowering stage	35.158
	SRR8316904	Silver flowering stage	54.742
	SRR8316905	Silver flowering stage	24.086
	SRR8316906	Gold flowering stage	80.056
	SRR8316907	Gold flowering stage	77.598
	SRR8316908	Gold flowering stage	102.706
SRP132670	SRR6706286	Control	63.656
	SRR6706287	Light intensity 50%	70.767
	SRR6706288	Light intensity 20%	75.893
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	39.561
	CNS0095593	Slightly white alabastrum(diploid) 2	41.609
	CNS0095594	Slightly white alabastrum(diploid) 3	51.223
	CNS0095595	Whole white alabastrum(diploid) 2	36.718
	CNS0095596	Whole white alabastrum(diploid) 3	18.793
	CNS0095597	Whole white alabastrum(diploid) 4	35.225
	CNS0095598	Silvery flower (diploied) 1	66.063
	CNS0095599	Silvery flower (diploied) 2	88.539
	CNS0095600	Silvery flower (diploied) 3	50.440
	CNS0095601	Golden flower (diploid) 1	57.236
	CNS0095602	Golden flower (diploid) 2	46.913
	CNS0095603	Golden flower (diploid) 3	47.292
	CNS0095604	Slightly white alabastrum(tetraploid) 1	36.379
	CNS0095605	Slightly white alabastrum(tetraploid) 2	29.115
	CNS0095606	Slightly white alabastrum(tetraploid) 3	93.615
	CNS0095607	Whole white alabastrum(tetraploid) 1	28.354
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.128
	CNS0095609	Whole white alabastrum(tetraploid) 3	57.429
	CNS0095610	Silvery flower (diploied) 1	67.341
	CNS0095611	Silvery flower (diploied) 2	86.877
	CNS0095612	Silvery flower (diploied) 3	267.419
	CNS0095613	Golden flower (tetraploid) 1	82.730
	CNS0095614	Golden flower (tetraploid) 2	62.846
	CNS0095615	Golden flower (tetraploid) 3	111.113
CRA001975	CRR073297	Stem 1	81.683
	CRR073298	Stem 2	60.986
	CRR073299	Stem 3	50.015
	CRR073300	Leaf 1	44.141
	CRR073301	Leaf 2	37.373
	CRR073302	Leaf 3	22.116
	CRR073303	Juvenile bud 1	23.182
	CRR073304	Juvenile bud 2	10.456
	CRR073305	Juvenile bud 3	29.333
	CRR073306	Third green 1	6.475
	CRR073307	Third green 2	5.056
	CRR073308	Third green 3	6.886
	CRR073309	Second white 1	8.849
	CRR073310	Second white 2	12.700
	CRR073311	Second white 3	9.548
	CRR073312	Silver flowering 1	12.618
	CRR073313	Silver flowering 2	14.937
	CRR073314	Silver flowering 3	11.655
	CRR073315	Gold flowering 1	5.069
	CRR073316	Gold flowering 2	6.275
	CRR073317	Gold flowering 3	4.083
	CRR073318	Tawny withering 1	36.907
	CRR073319	Tawny withering 2	55.688
	CRR073320	Tawny withering 3	39.343