Detail information of GWHGAAZE003720


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAIU98520.14.0549E-178WD40 protein [Paeonia suffruticosa]
COGYP_007036119.12E-10hypothetical protein BN6_19260
Swissprottr|Q9XGN1|TTG1_ARATH1E-163Protein TRANSPARENT TESTA GLABRA 1
trEMBLtr|A0A067LCP7|A0A067LCP7_JATCU2E-173Uncharacterized protein {ECO:0000313|EMBL:KDP45023.1}
TAIR10AT5G24520.32E-130Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene102863439102864215+
GWHAAZE00000001mRNA102863439102864215+
GWHAAZE00000001exon102863439102864215+
GWHAAZE00000001CDS102863439102864215+
Transcript Sequence

Network for GWHGAAZE003720

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0025GO:0015914 phospholipid transport GOslim:biological_process
GO:0140326 ATPase-coupled intramembrane lipid transporter activity GOslim:molecular_function


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD40881190.022
PF00400.33WD401742090.19
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf21.243
SRR3591706second leaf16.088
SRR3591707mature leaf20.720
SRR3591708Shoot apex20.710
SRR3591709Stem28.695
SRR3591710White floral bud22.702
SRR3591711White flower29.601
SRR3591712Green floral bud29.843
SRR3591713Yellow flower20.634
SRP173429 SRR8316895Juvenile bud stage 14.996
SRR8316896Juvenile bud stage 15.251
SRR8316897Juvenile bud stage 11.429
SRR8316894Third green stage 10.414
SRR8316900Third green stage 19.602
SRR8316901Third green stage 21.477
SRR8316898Complete white stage 4.699
SRR8316899Complete white stage 27.320
SRR8316903Complete white stage 9.036
SRR8316902Silver flowering stage3.572
SRR8316904Silver flowering stage5.955
SRR8316905Silver flowering stage2.787
SRR8316906Gold flowering stage 9.073
SRR8316907Gold flowering stage 6.652
SRR8316908Gold flowering stage 12.562
SRP132670SRR6706286Control14.231
SRR6706287Light intensity 50%14.220
SRR6706288Light intensity 20%14.722
CNP0000432CNS0095592Slightly white alabastrum(diploid) 119.620
CNS0095593Slightly white alabastrum(diploid) 220.031
CNS0095594Slightly white alabastrum(diploid) 321.369
CNS0095595Whole white alabastrum(diploid) 216.099
CNS0095596Whole white alabastrum(diploid) 310.209
CNS0095597Whole white alabastrum(diploid) 414.331
CNS0095598Silvery flower (diploied) 117.906
CNS0095599Silvery flower (diploied) 217.863
CNS0095600Silvery flower (diploied) 316.035
CNS0095601Golden flower (diploid) 119.676
CNS0095602Golden flower (diploid) 219.718
CNS0095603Golden flower (diploid) 319.941
CNS0095604Slightly white alabastrum(tetraploid) 114.210
CNS0095605Slightly white alabastrum(tetraploid) 214.115
CNS0095606Slightly white alabastrum(tetraploid) 324.470
CNS0095607Whole white alabastrum(tetraploid) 110.729
CNS0095608Whole white alabastrum(tetraploid) 210.094
CNS0095609Whole white alabastrum(tetraploid) 315.092
CNS0095610Silvery flower (diploied) 116.580
CNS0095611Silvery flower (diploied) 225.617
CNS0095612Silvery flower (diploied) 313.173
CNS0095613Golden flower (tetraploid) 113.545
CNS0095614Golden flower (tetraploid) 218.777
CNS0095615Golden flower (tetraploid) 311.110
CRA001975CRR073297Stem 126.483
CRR073298Stem 222.232
CRR073299Stem 332.074
CRR073300Leaf 129.303
CRR073301Leaf 229.160
CRR073302Leaf 326.258
CRR073303Juvenile bud 128.336
CRR073304Juvenile bud 225.173
CRR073305Juvenile bud 348.127
CRR073306Third green 13.031
CRR073307Third green 24.640
CRR073308Third green 32.840
CRR073309Second white 16.777
CRR073310Second white 24.625
CRR073311Second white 34.181
CRR073312Silver flowering 14.441
CRR073313Silver flowering 27.308
CRR073314Silver flowering 311.622
CRR073315Gold flowering 117.926
CRR073316Gold flowering 218.830
CRR073317Gold flowering 321.318
CRR073318Tawny withering 131.225
CRR073319Tawny withering 242.331
CRR073320Tawny withering 336.426