Detail information of GWHGAAZE003759


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010246433.15.3419E-147PREDICTED: probable CCR4-associated factor 1 homolog 9 [Nelumbo nucifera]
Swissprottr|Q9FMS6|CAF1K_ARATH3E-129Probable CCR4-associated factor 1 homolog 11
trEMBLtr|F6HHC1|F6HHC1_VITVI3E-146Putative uncharacterized protein {ECO:0000313|EMBL:CCB51617.1}
TAIR10AT5G22250.11E-103Polynucleotidyl transferase, ribonuclease H-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene103453814103455874-
GWHAAZE00000001mRNA103453814103455874-
GWHAAZE00000001exon103453814103454395-
GWHAAZE00000001exon103455424103455659-
GWHAAZE00000001exon103455853103455874-
GWHAAZE00000001CDS103455853103455874-
GWHAAZE00000001CDS103455424103455659-
GWHAAZE00000001CDS103453814103454395-
Transcript Sequence

Network for GWHGAAZE003759

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04857.21CAF1201471.10E-10
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K12581CNOT7_8, CAF1, POP2 RNA degradation map03018

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.002
SRR3591706second leaf3.800
SRR3591707mature leaf5.040
SRR3591708Shoot apex10.446
SRR3591709Stem10.262
SRR3591710White floral bud12.974
SRR3591711White flower16.698
SRR3591712Green floral bud11.231
SRR3591713Yellow flower8.741
SRP173429 SRR8316895Juvenile bud stage 13.274
SRR8316896Juvenile bud stage 17.637
SRR8316897Juvenile bud stage 7.393
SRR8316894Third green stage 6.386
SRR8316900Third green stage 21.871
SRR8316901Third green stage 20.431
SRR8316898Complete white stage 10.751
SRR8316899Complete white stage 24.583
SRR8316903Complete white stage 16.111
SRR8316902Silver flowering stage9.955
SRR8316904Silver flowering stage11.783
SRR8316905Silver flowering stage6.921
SRR8316906Gold flowering stage 21.383
SRR8316907Gold flowering stage 21.674
SRR8316908Gold flowering stage 18.047
SRP132670SRR6706286Control19.766
SRR6706287Light intensity 50%18.737
SRR6706288Light intensity 20%17.447
CNP0000432CNS0095592Slightly white alabastrum(diploid) 117.673
CNS0095593Slightly white alabastrum(diploid) 215.815
CNS0095594Slightly white alabastrum(diploid) 314.303
CNS0095595Whole white alabastrum(diploid) 213.807
CNS0095596Whole white alabastrum(diploid) 312.228
CNS0095597Whole white alabastrum(diploid) 411.378
CNS0095598Silvery flower (diploied) 113.220
CNS0095599Silvery flower (diploied) 215.544
CNS0095600Silvery flower (diploied) 324.095
CNS0095601Golden flower (diploid) 114.816
CNS0095602Golden flower (diploid) 218.117
CNS0095603Golden flower (diploid) 318.286
CNS0095604Slightly white alabastrum(tetraploid) 117.449
CNS0095605Slightly white alabastrum(tetraploid) 217.145
CNS0095606Slightly white alabastrum(tetraploid) 318.438
CNS0095607Whole white alabastrum(tetraploid) 110.278
CNS0095608Whole white alabastrum(tetraploid) 211.381
CNS0095609Whole white alabastrum(tetraploid) 312.842
CNS0095610Silvery flower (diploied) 121.422
CNS0095611Silvery flower (diploied) 221.085
CNS0095612Silvery flower (diploied) 325.774
CNS0095613Golden flower (tetraploid) 118.887
CNS0095614Golden flower (tetraploid) 217.794
CNS0095615Golden flower (tetraploid) 313.501
CRA001975CRR073297Stem 120.301
CRR073298Stem 218.654
CRR073299Stem 322.952
CRR073300Leaf 121.326
CRR073301Leaf 223.686
CRR073302Leaf 320.890
CRR073303Juvenile bud 127.617
CRR073304Juvenile bud 231.665
CRR073305Juvenile bud 323.343
CRR073306Third green 117.479
CRR073307Third green 213.179
CRR073308Third green 314.543
CRR073309Second white 114.042
CRR073310Second white 215.543
CRR073311Second white 311.596
CRR073312Silver flowering 113.307
CRR073313Silver flowering 219.385
CRR073314Silver flowering 314.722
CRR073315Gold flowering 126.285
CRR073316Gold flowering 218.560
CRR073317Gold flowering 320.050
CRR073318Tawny withering 118.454
CRR073319Tawny withering 212.170
CRR073320Tawny withering 317.737