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Detail information of GWHGAAZE003759
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
XP_010246433.1
5.3419E-147
PREDICTED: probable CCR4-associated factor 1 homolog 9 [Nelumbo nucifera]
Swissprot
tr|Q9FMS6|CAF1K_ARATH
3E-129
Probable CCR4-associated factor 1 homolog 11
trEMBL
tr|F6HHC1|F6HHC1_VITVI
3E-146
Putative uncharacterized protein {ECO:0000313|EMBL:CCB51617.1}
TAIR10
AT5G22250.1
1E-103
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000001
gene
103453814
103455874
-
GWHAAZE00000001
mRNA
103453814
103455874
-
GWHAAZE00000001
exon
103453814
103454395
-
GWHAAZE00000001
exon
103455424
103455659
-
GWHAAZE00000001
exon
103455853
103455874
-
GWHAAZE00000001
CDS
103455853
103455874
-
GWHAAZE00000001
CDS
103455424
103455659
-
GWHAAZE00000001
CDS
103453814
103454395
-
Transcript Sequence
>GWHTAAZE003765 ATGATTACTAGAAGTGGGCCACATCTAATGGCGAACAAGCCGATAATCGTACGTTCAGTATGGTCCGAAAACCTAGAATCGGAGTTCGAGTTGATCCGTCATCTAGTAGATCAGTACCCCTTCGTATCGATGGACACTGAGTTCCCCGGTGTTGTTGTACGACCGTCTGGTGACGGTAACAACTATATTCCTGACCGAAACCCTAAATCTCACTTCTCCATACTCAAAACGAATGTCAACTTGTTGAACCTCATTCAGGTAGGGCTTACTTTCTCAGATGCTGATGGTAACCTCCCCGAACTTGGCACTGAAAGCCGGTACATCTGGGAGTTTAATTTTAGGGATTTCAATGTGGCGCGTGACTACCACGCTTCGGACTCGATCGAGCTGTTGAGGAGACAGGGGATTGATTTTGAGAAGAACTATGAGCGGGGGATTGATTCGATGAAATTTGCTGAATTAATGATGTCATCGGGCCTTGTGTGTAATGAATTGGTGAGTTGGGTCACTTTTCACAGTGCTTATGATTTCGGTTACTTGCTGAAGATGCTGACCGGACAGCCGTTGCCGGAAGATTTGGGGAAGTTTCTTGATCTTCTGAGGGCATTCTTTGGGGCTAGGGTTTATGATGTGAAGCATTTGATGAAATTTTGTAAGAGCCTGTATGGTGGATTAGACAGGGTAGCTAGGACGCTTGAGGTGGACCGAGCGGTTGGGAAGTGCCACCAGGCTGGGTCAGACAGCTTGCTGACTTGGCATGCTTTTCAGAAGATCAAATACCTCTGCAAAGATGGTCCTGAGAAGTATGCTGGTGTTCTGTATGGCTTAGAGGTTTTCTGA
Network for GWHGAAZE003759
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF04857.21
CAF1
20
147
1.10E-10
Protein Sequence
>GWHPAAZE003762 MITRSGPHLMANKPIIVRSVWSENLESEFELIRHLVDQYPFVSMDTEFPGVVVRPSGDGNNYIPDRNPKSHFSILKTNVNLLNLIQVGLTFSDADGNLPELGTESRYIWEFNFRDFNVARDYHASDSIELLRRQGIDFEKNYERGIDSMKFAELMMSSGLVCNELVSWVTFHSAYDFGYLLKMLTGQPLPEDLGKFLDLLRAFFGARVYDVKHLMKFCKSLYGGLDRVARTLEVDRAVGKCHQAGSDSLLTWHAFQKIKYLCKDGPEKYAGVLYGLEVF
Gene family
Gene family
subfamily
--
--
KEGG pathway
KO
Enzyme
pathway
mapID
K12581
CNOT7_8, CAF1, POP2
RNA degradation
map03018
Gene Ontology
GO term
Ontology
Name
GO:0003676
molecular_function
nucleic acid binding
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
8.002
SRR3591706
second leaf
3.800
SRR3591707
mature leaf
5.040
SRR3591708
Shoot apex
10.446
SRR3591709
Stem
10.262
SRR3591710
White floral bud
12.974
SRR3591711
White flower
16.698
SRR3591712
Green floral bud
11.231
SRR3591713
Yellow flower
8.741
SRP173429
SRR8316895
Juvenile bud stage
13.274
SRR8316896
Juvenile bud stage
17.637
SRR8316897
Juvenile bud stage
7.393
SRR8316894
Third green stage
6.386
SRR8316900
Third green stage
21.871
SRR8316901
Third green stage
20.431
SRR8316898
Complete white stage
10.751
SRR8316899
Complete white stage
24.583
SRR8316903
Complete white stage
16.111
SRR8316902
Silver flowering stage
9.955
SRR8316904
Silver flowering stage
11.783
SRR8316905
Silver flowering stage
6.921
SRR8316906
Gold flowering stage
21.383
SRR8316907
Gold flowering stage
21.674
SRR8316908
Gold flowering stage
18.047
SRP132670
SRR6706286
Control
19.766
SRR6706287
Light intensity 50%
18.737
SRR6706288
Light intensity 20%
17.447
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
17.673
CNS0095593
Slightly white alabastrum(diploid) 2
15.815
CNS0095594
Slightly white alabastrum(diploid) 3
14.303
CNS0095595
Whole white alabastrum(diploid) 2
13.807
CNS0095596
Whole white alabastrum(diploid) 3
12.228
CNS0095597
Whole white alabastrum(diploid) 4
11.378
CNS0095598
Silvery flower (diploied) 1
13.220
CNS0095599
Silvery flower (diploied) 2
15.544
CNS0095600
Silvery flower (diploied) 3
24.095
CNS0095601
Golden flower (diploid) 1
14.816
CNS0095602
Golden flower (diploid) 2
18.117
CNS0095603
Golden flower (diploid) 3
18.286
CNS0095604
Slightly white alabastrum(tetraploid) 1
17.449
CNS0095605
Slightly white alabastrum(tetraploid) 2
17.145
CNS0095606
Slightly white alabastrum(tetraploid) 3
18.438
CNS0095607
Whole white alabastrum(tetraploid) 1
10.278
CNS0095608
Whole white alabastrum(tetraploid) 2
11.381
CNS0095609
Whole white alabastrum(tetraploid) 3
12.842
CNS0095610
Silvery flower (diploied) 1
21.422
CNS0095611
Silvery flower (diploied) 2
21.085
CNS0095612
Silvery flower (diploied) 3
25.774
CNS0095613
Golden flower (tetraploid) 1
18.887
CNS0095614
Golden flower (tetraploid) 2
17.794
CNS0095615
Golden flower (tetraploid) 3
13.501
CRA001975
CRR073297
Stem 1
20.301
CRR073298
Stem 2
18.654
CRR073299
Stem 3
22.952
CRR073300
Leaf 1
21.326
CRR073301
Leaf 2
23.686
CRR073302
Leaf 3
20.890
CRR073303
Juvenile bud 1
27.617
CRR073304
Juvenile bud 2
31.665
CRR073305
Juvenile bud 3
23.343
CRR073306
Third green 1
17.479
CRR073307
Third green 2
13.179
CRR073308
Third green 3
14.543
CRR073309
Second white 1
14.042
CRR073310
Second white 2
15.543
CRR073311
Second white 3
11.596
CRR073312
Silver flowering 1
13.307
CRR073313
Silver flowering 2
19.385
CRR073314
Silver flowering 3
14.722
CRR073315
Gold flowering 1
26.285
CRR073316
Gold flowering 2
18.560
CRR073317
Gold flowering 3
20.050
CRR073318
Tawny withering 1
18.454
CRR073319
Tawny withering 2
12.170
CRR073320
Tawny withering 3
17.737