Detail information of GWHGAAZE003791


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006429777.10hypothetical protein CICLE_v10011953mg [Citrus clementina]
COGYP_004641919.11E-54pectinesterase
Swissprottr|O23038|PME8_ARATH7E-180Probable pectinesterase 8 (Precursor)
trEMBLtr|V4SQN7|V4SQN7_9ROSI0Pectinesterase {ECO:0000256|RuleBase:RU000589}
TAIR10AT1G05310.15E-127Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene104355948104357904-
GWHAAZE00000001mRNA104355948104357904-
GWHAAZE00000001exon104355948104356107-
GWHAAZE00000001exon104356223104356482-
GWHAAZE00000001exon104356634104356840-
GWHAAZE00000001exon104356983104357154-
GWHAAZE00000001exon104357522104357904-
GWHAAZE00000001CDS104357522104357904-
GWHAAZE00000001CDS104356983104357154-
GWHAAZE00000001CDS104356634104356840-
GWHAAZE00000001CDS104356223104356482-
GWHAAZE00000001CDS104355948104356107-
Transcript Sequence

Network for GWHGAAZE003791

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0249GO:0005507 copper ion binding GOslim:molecular_function
GO:0055114 oxidation-reduction process GOslim:biological_process
GO:0046274 lignin catabolic process GOslim:biological_process
GO:0052716 hydroquinone:oxygen oxidoreductase activity GOslim:molecular_function
GO:0048046 apoplast GOslim:cellular_component
GO:0016491 oxidoreductase activity GOslim:molecular_function


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01095.20Pectinesterase903848.50E-68
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0042545biological_processcell wall modification
GO:0030599molecular_functionpectinesterase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.188
SRR3591706second leaf2.097
SRR3591707mature leaf0.214
SRR3591708Shoot apex0.836
SRR3591709Stem6.657
SRR3591710White floral bud3.652
SRR3591711White flower1.181
SRR3591712Green floral bud2.888
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 1.555
SRR8316896Juvenile bud stage 1.918
SRR8316897Juvenile bud stage 0.453
SRR8316894Third green stage 1.291
SRR8316900Third green stage 8.486
SRR8316901Third green stage 5.830
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 2.238
SRR8316903Complete white stage 0.902
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.078
SRR8316905Silver flowering stage0.067
SRR8316906Gold flowering stage 0.153
SRR8316907Gold flowering stage 0.003
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control7.020
SRR6706287Light intensity 50%5.383
SRR6706288Light intensity 20%5.955
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.322
CNS0095593Slightly white alabastrum(diploid) 20.602
CNS0095594Slightly white alabastrum(diploid) 30.449
CNS0095595Whole white alabastrum(diploid) 20.582
CNS0095596Whole white alabastrum(diploid) 30.314
CNS0095597Whole white alabastrum(diploid) 40.995
CNS0095598Silvery flower (diploied) 10.019
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.950
CNS0095601Golden flower (diploid) 10.066
CNS0095602Golden flower (diploid) 20.574
CNS0095603Golden flower (diploid) 30.198
CNS0095604Slightly white alabastrum(tetraploid) 10.106
CNS0095605Slightly white alabastrum(tetraploid) 20.045
CNS0095606Slightly white alabastrum(tetraploid) 39.565
CNS0095607Whole white alabastrum(tetraploid) 10.019
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 36.320
CNS0095610Silvery flower (diploied) 10.099
CNS0095611Silvery flower (diploied) 20.042
CNS0095612Silvery flower (diploied) 30.054
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.038
CNS0095615Golden flower (tetraploid) 30.298
CRA001975CRR073297Stem 10.356
CRR073298Stem 20.982
CRR073299Stem 30.727
CRR073300Leaf 12.175
CRR073301Leaf 20.637
CRR073302Leaf 31.456
CRR073303Juvenile bud 10.245
CRR073304Juvenile bud 20.030
CRR073305Juvenile bud 30.211
CRR073306Third green 10.137
CRR073307Third green 20.000
CRR073308Third green 30.122
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.137
CRR073319Tawny withering 21.606
CRR073320Tawny withering 31.496