Detail information of GWHGAAZE003834


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKHG29154.10putative ATP-dependent RNA helicase DHX36 [Gossypium arboreum]
COGYP_008372790.12E-54HrpA-like helicase
Swissprottr|O22899|DHX15_ARATH5E-56Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
trEMBLtr|K4ASR3|K4ASR3_SOLLC0Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc01g006970.2.1}
TAIR10AT2G35920.10RNA helicase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene105497551105503766-
GWHAAZE00000001mRNA105497551105503766-
GWHAAZE00000001exon105497551105497682-
GWHAAZE00000001exon105498920105499288-
GWHAAZE00000001exon105499952105500138-
GWHAAZE00000001exon105501976105502168-
GWHAAZE00000001exon105502981105503254-
GWHAAZE00000001exon105503366105503525-
GWHAAZE00000001exon105503738105503766-
GWHAAZE00000001CDS105503738105503766-
GWHAAZE00000001CDS105503366105503525-
GWHAAZE00000001CDS105502981105503254-
GWHAAZE00000001CDS105501976105502168-
GWHAAZE00000001CDS105499952105500138-
GWHAAZE00000001CDS105498920105499288-
GWHAAZE00000001CDS105497551105497682-
Transcript Sequence

Network for GWHGAAZE003834

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00271.32Helicase_C9716.40E-08
PF04408.24HA21352166.90E-22
PF07717.17OB_NTP_bind2943752.80E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14442DHX36, RHAU RNA degradation map03018

Gene Ontology

GO term OntologyName
GO:0004386molecular_functionhelicase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf21.720
SRR3591706second leaf13.830
SRR3591707mature leaf13.522
SRR3591708Shoot apex27.028
SRR3591709Stem16.940
SRR3591710White floral bud11.764
SRR3591711White flower15.853
SRR3591712Green floral bud19.041
SRR3591713Yellow flower12.330
SRP173429 SRR8316895Juvenile bud stage 12.533
SRR8316896Juvenile bud stage 18.213
SRR8316897Juvenile bud stage 9.866
SRR8316894Third green stage 6.394
SRR8316900Third green stage 16.311
SRR8316901Third green stage 15.507
SRR8316898Complete white stage 2.930
SRR8316899Complete white stage 14.200
SRR8316903Complete white stage 5.707
SRR8316902Silver flowering stage3.425
SRR8316904Silver flowering stage5.344
SRR8316905Silver flowering stage1.828
SRR8316906Gold flowering stage 7.941
SRR8316907Gold flowering stage 7.397
SRR8316908Gold flowering stage 9.308
SRP132670SRR6706286Control11.125
SRR6706287Light intensity 50%12.118
SRR6706288Light intensity 20%13.548
CNP0000432CNS0095592Slightly white alabastrum(diploid) 117.036
CNS0095593Slightly white alabastrum(diploid) 215.911
CNS0095594Slightly white alabastrum(diploid) 318.645
CNS0095595Whole white alabastrum(diploid) 215.642
CNS0095596Whole white alabastrum(diploid) 313.922
CNS0095597Whole white alabastrum(diploid) 414.610
CNS0095598Silvery flower (diploied) 113.209
CNS0095599Silvery flower (diploied) 210.259
CNS0095600Silvery flower (diploied) 312.582
CNS0095601Golden flower (diploid) 110.770
CNS0095602Golden flower (diploid) 212.974
CNS0095603Golden flower (diploid) 312.907
CNS0095604Slightly white alabastrum(tetraploid) 116.466
CNS0095605Slightly white alabastrum(tetraploid) 216.368
CNS0095606Slightly white alabastrum(tetraploid) 316.990
CNS0095607Whole white alabastrum(tetraploid) 114.081
CNS0095608Whole white alabastrum(tetraploid) 210.097
CNS0095609Whole white alabastrum(tetraploid) 317.667
CNS0095610Silvery flower (diploied) 112.386
CNS0095611Silvery flower (diploied) 211.006
CNS0095612Silvery flower (diploied) 39.602
CNS0095613Golden flower (tetraploid) 17.459
CNS0095614Golden flower (tetraploid) 210.727
CNS0095615Golden flower (tetraploid) 38.049
CRA001975CRR073297Stem 119.880
CRR073298Stem 215.394
CRR073299Stem 319.054
CRR073300Leaf 119.785
CRR073301Leaf 215.161
CRR073302Leaf 314.352
CRR073303Juvenile bud 113.487
CRR073304Juvenile bud 210.445
CRR073305Juvenile bud 317.831
CRR073306Third green 11.326
CRR073307Third green 21.642
CRR073308Third green 32.544
CRR073309Second white 13.394
CRR073310Second white 23.651
CRR073311Second white 33.528
CRR073312Silver flowering 14.075
CRR073313Silver flowering 26.511
CRR073314Silver flowering 32.835
CRR073315Gold flowering 19.721
CRR073316Gold flowering 211.774
CRR073317Gold flowering 36.598
CRR073318Tawny withering 116.316
CRR073319Tawny withering 213.522
CRR073320Tawny withering 320.212