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Detail information of GWHGAAZE003834
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
KHG29154.1
0
putative ATP-dependent RNA helicase DHX36 [Gossypium arboreum]
COG
YP_008372790.1
2E-54
HrpA-like helicase
Swissprot
tr|O22899|DHX15_ARATH
5E-56
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
trEMBL
tr|K4ASR3|K4ASR3_SOLLC
0
Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc01g006970.2.1}
TAIR10
AT2G35920.1
0
RNA helicase family protein
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000001
gene
105497551
105503766
-
GWHAAZE00000001
mRNA
105497551
105503766
-
GWHAAZE00000001
exon
105497551
105497682
-
GWHAAZE00000001
exon
105498920
105499288
-
GWHAAZE00000001
exon
105499952
105500138
-
GWHAAZE00000001
exon
105501976
105502168
-
GWHAAZE00000001
exon
105502981
105503254
-
GWHAAZE00000001
exon
105503366
105503525
-
GWHAAZE00000001
exon
105503738
105503766
-
GWHAAZE00000001
CDS
105503738
105503766
-
GWHAAZE00000001
CDS
105503366
105503525
-
GWHAAZE00000001
CDS
105502981
105503254
-
GWHAAZE00000001
CDS
105501976
105502168
-
GWHAAZE00000001
CDS
105499952
105500138
-
GWHAAZE00000001
CDS
105498920
105499288
-
GWHAAZE00000001
CDS
105497551
105497682
-
Transcript Sequence
>GWHTAAZE003840 ATGAAAATTCTCAAAAAGGATGTAAAATTAAAAATTGTGCTCGCAACAAACATTGCGGAAAGTAGCATAACTATAGACGATGTTGTATATGTAATAGACTGTGGAAAGGCAAAGGAGACTAGTTATGATGCTCTAAACAAGCTGGCTTGTCTACTACCATCATGGATTTCAAAGGCTTCAGCACATCAGAGACGTGGTCGTGCGGGCCGTGTTCAACCTGGAGTGTGTTATAGACTCTATCCAAAGATGATACACGATGCTATGCTCCAGTATCAACTACCAGAAATTCTTCGAACACCTCTGCAAGAGCTATGCCTTCATATCAAGAGCTTGCAACTCGGAACGATTGGTTCATTTTTGTCCAAGGCACTTCAGCCTCCGGATCCTCTCTCTGTTCAAAACGCAATTGAACTTCTCAAAACAATTGGGGCCTTAGATGATTCTGAAGAGCTTACTCCACTTGGGCGACATTTATGCACTTTGCCATTGGAGCCAAATATCGGAAAGATGCTTCTCATGGGTTCAATCTTTCAATGCCTTGATCCCGCATTAACAATTGCTGCTGCTCTTGCGCATCGTGACCCCTTTGTGCTTCCAATAAATCGGAAAGAAGAAGCTGATGATGCAAAAAGAGCCTTTGCTGGTGATTCTTGCAGTGACCACATAGCGCTTCTCAAAGCTTTTGAAGGATGGAGGGATGCAAAACGAGGTGGGAACGAAAGATCATTTTGTTGGGAAAATTTCTTATCACCGTTAACCTTGCAGATGATGGAGGATATGAGAAGACAATTTATAGATCTATTGTCAGATATTGGTTTTGTAGATAAATCCAGGGGCGCTAATGCTTATAACCAATATAGCAATGATTTGGAGATGGTATGTGCAATCCTGTGTGCTGGGCTCTACCCTAATGTTGTGCAATGCAAAAGAAGAGGAAAACGGACAGCTTTCTACTCTAAAGATGTAGGGAAGGTTGATATCCACCCAGCATCTGTCAATGCAGGTGTTCATCTCTTCCCTCTTCCTTTCATGGTTTACAGCGAGAAGGTGAAAACTAGCAGTATCTATATACGCGATTCCACAAACATCTCGGATTATGCCCTGCTTATGTTTGGCGGTAATCTCATTCCTAGCAAAACTGGCGAGGGTATTGAGATGCTTGAAGGGTACCTCCACTTCTCTGCGTCAAAGAGCGTGTTGGTCTTAATAAGGAAACTAAGAGGAGAACTTGACAAACTACTGAAGAGGAAGATAGAAGAGCCTGGGTTGGACATCTCTGTTGAGGGGAAGGCAGTGGTTGCTGCTGTGGTCGAATTACTCCATAGTCAGAGTGTACGGTACTAG
Network for GWHGAAZE003834
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF00271.32
Helicase_C
9
71
6.40E-08
PF04408.24
HA2
135
216
6.90E-22
PF07717.17
OB_NTP_bind
294
375
2.80E-17
Protein Sequence
>GWHPAAZE003837 MKILKKDVKLKIVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYRLYPKMIHDAMLQYQLPEILRTPLQELCLHIKSLQLGTIGSFLSKALQPPDPLSVQNAIELLKTIGALDDSEELTPLGRHLCTLPLEPNIGKMLLMGSIFQCLDPALTIAAALAHRDPFVLPINRKEEADDAKRAFAGDSCSDHIALLKAFEGWRDAKRGGNERSFCWENFLSPLTLQMMEDMRRQFIDLLSDIGFVDKSRGANAYNQYSNDLEMVCAILCAGLYPNVVQCKRRGKRTAFYSKDVGKVDIHPASVNAGVHLFPLPFMVYSEKVKTSSIYIRDSTNISDYALLMFGGNLIPSKTGEGIEMLEGYLHFSASKSVLVLIRKLRGELDKLLKRKIEEPGLDISVEGKAVVAAVVELLHSQSVRY
Gene family
Gene family
subfamily
--
--
KEGG pathway
KO
Enzyme
pathway
mapID
K14442
DHX36, RHAU
RNA degradation
map03018
Gene Ontology
GO term
Ontology
Name
GO:0004386
molecular_function
helicase activity
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
21.720
SRR3591706
second leaf
13.830
SRR3591707
mature leaf
13.522
SRR3591708
Shoot apex
27.028
SRR3591709
Stem
16.940
SRR3591710
White floral bud
11.764
SRR3591711
White flower
15.853
SRR3591712
Green floral bud
19.041
SRR3591713
Yellow flower
12.330
SRP173429
SRR8316895
Juvenile bud stage
12.533
SRR8316896
Juvenile bud stage
18.213
SRR8316897
Juvenile bud stage
9.866
SRR8316894
Third green stage
6.394
SRR8316900
Third green stage
16.311
SRR8316901
Third green stage
15.507
SRR8316898
Complete white stage
2.930
SRR8316899
Complete white stage
14.200
SRR8316903
Complete white stage
5.707
SRR8316902
Silver flowering stage
3.425
SRR8316904
Silver flowering stage
5.344
SRR8316905
Silver flowering stage
1.828
SRR8316906
Gold flowering stage
7.941
SRR8316907
Gold flowering stage
7.397
SRR8316908
Gold flowering stage
9.308
SRP132670
SRR6706286
Control
11.125
SRR6706287
Light intensity 50%
12.118
SRR6706288
Light intensity 20%
13.548
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
17.036
CNS0095593
Slightly white alabastrum(diploid) 2
15.911
CNS0095594
Slightly white alabastrum(diploid) 3
18.645
CNS0095595
Whole white alabastrum(diploid) 2
15.642
CNS0095596
Whole white alabastrum(diploid) 3
13.922
CNS0095597
Whole white alabastrum(diploid) 4
14.610
CNS0095598
Silvery flower (diploied) 1
13.209
CNS0095599
Silvery flower (diploied) 2
10.259
CNS0095600
Silvery flower (diploied) 3
12.582
CNS0095601
Golden flower (diploid) 1
10.770
CNS0095602
Golden flower (diploid) 2
12.974
CNS0095603
Golden flower (diploid) 3
12.907
CNS0095604
Slightly white alabastrum(tetraploid) 1
16.466
CNS0095605
Slightly white alabastrum(tetraploid) 2
16.368
CNS0095606
Slightly white alabastrum(tetraploid) 3
16.990
CNS0095607
Whole white alabastrum(tetraploid) 1
14.081
CNS0095608
Whole white alabastrum(tetraploid) 2
10.097
CNS0095609
Whole white alabastrum(tetraploid) 3
17.667
CNS0095610
Silvery flower (diploied) 1
12.386
CNS0095611
Silvery flower (diploied) 2
11.006
CNS0095612
Silvery flower (diploied) 3
9.602
CNS0095613
Golden flower (tetraploid) 1
7.459
CNS0095614
Golden flower (tetraploid) 2
10.727
CNS0095615
Golden flower (tetraploid) 3
8.049
CRA001975
CRR073297
Stem 1
19.880
CRR073298
Stem 2
15.394
CRR073299
Stem 3
19.054
CRR073300
Leaf 1
19.785
CRR073301
Leaf 2
15.161
CRR073302
Leaf 3
14.352
CRR073303
Juvenile bud 1
13.487
CRR073304
Juvenile bud 2
10.445
CRR073305
Juvenile bud 3
17.831
CRR073306
Third green 1
1.326
CRR073307
Third green 2
1.642
CRR073308
Third green 3
2.544
CRR073309
Second white 1
3.394
CRR073310
Second white 2
3.651
CRR073311
Second white 3
3.528
CRR073312
Silver flowering 1
4.075
CRR073313
Silver flowering 2
6.511
CRR073314
Silver flowering 3
2.835
CRR073315
Gold flowering 1
9.721
CRR073316
Gold flowering 2
11.774
CRR073317
Gold flowering 3
6.598
CRR073318
Tawny withering 1
16.316
CRR073319
Tawny withering 2
13.522
CRR073320
Tawny withering 3
20.212