Gene detail

Detail information of GWHGAAZE003892

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008240500.1	0	PREDICTED: lysosomal beta glucosidase-like [Prunus mume]
COG	YP_003265703.1	0	glycoside hydrolase
Swissprot	tr\|A5JTQ3\|XYL2_MEDSV	2E-37	Alpha-L-arabinofuranosidase (Precursor)
trEMBL	tr\|U5FEM9\|U5FEM9_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:ERP48970.1}
TAIR10	AT5G20950.2	0	Glycosyl hydrolase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	106601440	106608470	+
GWHAAZE00000001	mRNA	106601440	106608470	+
GWHAAZE00000001	exon	106601440	106601671	+
GWHAAZE00000001	exon	106601769	106601963	+
GWHAAZE00000001	exon	106602109	106602221	+
GWHAAZE00000001	exon	106602787	106602932	+
GWHAAZE00000001	exon	106605201	106605444	+
GWHAAZE00000001	exon	106605770	106605874	+
GWHAAZE00000001	exon	106606559	106606943	+
GWHAAZE00000001	exon	106607980	106608470	+
GWHAAZE00000001	CDS	106601440	106601671	+
GWHAAZE00000001	CDS	106601769	106601963	+
GWHAAZE00000001	CDS	106602109	106602221	+
GWHAAZE00000001	CDS	106602787	106602932	+
GWHAAZE00000001	CDS	106605201	106605444	+
GWHAAZE00000001	CDS	106605770	106605874	+
GWHAAZE00000001	CDS	106606559	106606943	+
GWHAAZE00000001	CDS	106607980	106608470	+

Transcript Sequence
>GWHTAAZE003898 AGATCAAAGGCAATGGCGAAAAATTTGGTGTTCGTGGTGGGGATTGTGTTCATGTGTGTCTGTGCAGCAATGGCAGAAGCAGGGTACATGAAATACAAAGATCCAAAACAACCCTTAAACGTTCGAATAAAGGACTTAATGAAACGAATGACCTTAGAGGAAAAGGTTGGGCAAATGACGCAGATTGACCGAACAGTAGCATCGAATGAGGTCATGAAGAAGTATTTTATTGGGAGCGTATTGAGTGGTGGAGGCAGTGTGCCTGCTAAACAAGCATCTCCGGAGACTTGGATCGACATGGTGAATGATTTTCAAAATGGTTCTTTATCCACCCGTCTTGGTATTCCAATGATTTATGGGATTGATGCTGTTCATGGCCACAATAATGTTTACAAGGCCACAATTTTTCCTCATAATGTTGGTCTAGTTATTTTCTTCATAATGGACAGGGACCCAATACTGGTGAAGAAGATTGGAGCTGCAACTGCTCTTGAAGTCAGAGCTACCGGCATTTCTTATGCTTTTGCACCTTGTATTGCGGTATGCAGAGATCCAAGGTGGGGCCGGTGTTTTGAAAGTTACAGCGAAGATCCAAAAATTGTCAGAGCAATGACAGAGCTAATTCCCGGTCTGCAGGGTGACATACCTCCTTATTCTCCAAAGGGCGTTCCTTTTCTTGCTGGACAGGACAAGATTGCAGCATGTGCGAAGCACTTTGTAGGGGACGGTGGAACGAACAAAGGGATGAACGAGAATAATACGATTATAAACGGGCACGATATGTTCAGCATTCACATGCCAGCCTACTACGACTCCGTTCGGAAGGGGGTTGCCACCATCATGGTCTCTTACTCCAGCTGGAATGGTGTTAAAATGCACTCTAACCGTGCACTCATCACTGGCTTTCTCAAGAATAAACTCCGTTTCAGAGGGTTTGTGATATCAGATTGGGAAGGAATTGATAGGATGACAACTCCACCTCATGCCAACTATACATGGTCCATTCTTACTGGTATTCAGGCTGGCATTGACATGATTATGGTACCATCTAAATACCAAGAATTCATTGATGGACTAACCAAGCTAGTGAAGAACAAATTCATTCCCATGACTAGAATTGATGATGCAGTGAGCAGAATCTTGAGGGTAAAATTTGTGATGGGTTTATTTGAGAATCCACTGGGTGATTATAGCATGGCCAAGTACCTTGGAAGTAAAGAGCACAGAGAACTAGCAAGGGAAGCTGTGAGGAAATCACTTGTTCTTCTCAAGAATGGGAAATATGCTCATCAGCCTTTGTTGCCACTTCCAAAGAAGGCAACTAAAGTACTTGTTGCTGGTAGTCATGCTCACAATATTGGGAATCAATGCGGTGGATGGACTATTGAATGGCAAGGAAAAAGTGGCAATATCACAACTGGTACCACAATCCTCACCGCGGTAAAGAACACGGTTGACCCTGGCACAGAAGTTGTGTACCAAGAGAACCCAAGTGCGGATTACGTAAAGTCCAACAAATTCTCCTATGCCATCGTTGTAGTGGGAGAACCACCCTATTCAGAGACATTCGGAGACAGCTTAAACCTGACAATTCCTGACTCCAGTATCTCCACCATAAAAAACGTCTGTGGTGGCACCGTCAAGTGCGTTGTTGTCCTTATTTCTGGCCGTCCGGTCGCAATCCAACCATACGTTGACAAAATGGATGCCCTTGTAGCTGCTTGGCTACCTGGAACCGAAGGCCAAGGTGTTGCTGATGTTTTATTTGGTGACTATGGGTTCACCGGCAAGCTTTCGCGGACTTGGTTTAAAAGTGTTGATCAGCTCCCGATGAATGTTGGGGATAAGCATTATGACCCATTATACCCATTTGGATTTGGACTCACCACTAAACCTATTAAGGCCGCATAG

Network for GWHGAAZE003892

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00933.22	Glyco_hydro_3	51	383	3.00E-68
PF01915.23	Glyco_hydro_3_C	420	629	5.90E-37

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05349	bglX	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500
		Cyanoamino acid metabolism	map00460
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.769
	SRR3591706	second leaf	1.850
	SRR3591707	mature leaf	0.505
	SRR3591708	Shoot apex	13.721
	SRR3591709	Stem	1.029
	SRR3591710	White floral bud	10.411
	SRR3591711	White flower	1.810
	SRR3591712	Green floral bud	3.871
	SRR3591713	Yellow flower	106.367
SRP173429	SRR8316895	Juvenile bud stage	8.017
	SRR8316896	Juvenile bud stage	12.913
	SRR8316897	Juvenile bud stage	6.012
	SRR8316894	Third green stage	3.408
	SRR8316900	Third green stage	4.898
	SRR8316901	Third green stage	4.481
	SRR8316898	Complete white stage	11.795
	SRR8316899	Complete white stage	8.380
	SRR8316903	Complete white stage	10.757
	SRR8316902	Silver flowering stage	2.854
	SRR8316904	Silver flowering stage	5.486
	SRR8316905	Silver flowering stage	1.095
	SRR8316906	Gold flowering stage	21.326
	SRR8316907	Gold flowering stage	12.677
	SRR8316908	Gold flowering stage	22.184
SRP132670	SRR6706286	Control	10.297
	SRR6706287	Light intensity 50%	7.795
	SRR6706288	Light intensity 20%	5.341
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.491
	CNS0095593	Slightly white alabastrum(diploid) 2	3.367
	CNS0095594	Slightly white alabastrum(diploid) 3	3.272
	CNS0095595	Whole white alabastrum(diploid) 2	2.002
	CNS0095596	Whole white alabastrum(diploid) 3	0.911
	CNS0095597	Whole white alabastrum(diploid) 4	0.761
	CNS0095598	Silvery flower (diploied) 1	0.799
	CNS0095599	Silvery flower (diploied) 2	0.322
	CNS0095600	Silvery flower (diploied) 3	3.961
	CNS0095601	Golden flower (diploid) 1	3.891
	CNS0095602	Golden flower (diploid) 2	19.100
	CNS0095603	Golden flower (diploid) 3	21.731
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.812
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.902
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.328
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.534
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.450
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.096
	CNS0095610	Silvery flower (diploied) 1	9.858
	CNS0095611	Silvery flower (diploied) 2	1.904
	CNS0095612	Silvery flower (diploied) 3	2.201
	CNS0095613	Golden flower (tetraploid) 1	20.577
	CNS0095614	Golden flower (tetraploid) 2	28.536
	CNS0095615	Golden flower (tetraploid) 3	17.517
CRA001975	CRR073297	Stem 1	8.654
	CRR073298	Stem 2	4.943
	CRR073299	Stem 3	6.003
	CRR073300	Leaf 1	4.298
	CRR073301	Leaf 2	3.047
	CRR073302	Leaf 3	6.988
	CRR073303	Juvenile bud 1	1.844
	CRR073304	Juvenile bud 2	2.752
	CRR073305	Juvenile bud 3	2.324
	CRR073306	Third green 1	2.002
	CRR073307	Third green 2	0.662
	CRR073308	Third green 3	1.228
	CRR073309	Second white 1	1.771
	CRR073310	Second white 2	2.451
	CRR073311	Second white 3	2.000
	CRR073312	Silver flowering 1	24.297
	CRR073313	Silver flowering 2	23.131
	CRR073314	Silver flowering 3	18.017
	CRR073315	Gold flowering 1	0.774
	CRR073316	Gold flowering 2	1.092
	CRR073317	Gold flowering 3	1.348
	CRR073318	Tawny withering 1	5.519
	CRR073319	Tawny withering 2	3.735
	CRR073320	Tawny withering 3	1.636