Gene detail

Detail information of GWHGAAZE003908

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010243731.1	0	PREDICTED: exosome component 10 [Nelumbo nucifera]
COG	YP_903266.1	7E-28	3'-5' exonuclease
trEMBL	tr\|A0A022PPF0\|A0A022PPF0_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU18187.1}
TAIR10	AT5G35910.1	0	Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	106867881	106888247	+
GWHAAZE00000001	mRNA	106867881	106888247	+
GWHAAZE00000001	exon	106867881	106868402	+
GWHAAZE00000001	exon	106868914	106869087	+
GWHAAZE00000001	exon	106871503	106871658	+
GWHAAZE00000001	exon	106873694	106873852	+
GWHAAZE00000001	exon	106873931	106874014	+
GWHAAZE00000001	exon	106875614	106875693	+
GWHAAZE00000001	exon	106875836	106875886	+
GWHAAZE00000001	exon	106882688	106882796	+
GWHAAZE00000001	exon	106885793	106885880	+
GWHAAZE00000001	exon	106886005	106886174	+
GWHAAZE00000001	exon	106886771	106887004	+
GWHAAZE00000001	exon	106887273	106887380	+
GWHAAZE00000001	exon	106887987	106888247	+
GWHAAZE00000001	CDS	106867881	106868402	+
GWHAAZE00000001	CDS	106868914	106869087	+
GWHAAZE00000001	CDS	106871503	106871658	+
GWHAAZE00000001	CDS	106873694	106873852	+
GWHAAZE00000001	CDS	106873931	106874014	+
GWHAAZE00000001	CDS	106875614	106875693	+
GWHAAZE00000001	CDS	106875836	106875886	+
GWHAAZE00000001	CDS	106882688	106882796	+
GWHAAZE00000001	CDS	106885793	106885880	+
GWHAAZE00000001	CDS	106886005	106886174	+
GWHAAZE00000001	CDS	106886771	106887004	+
GWHAAZE00000001	CDS	106887273	106887380	+
GWHAAZE00000001	CDS	106887987	106888247	+

Transcript Sequence
>GWHTAAZE003914 ATGGAGATCGATCCATCTCAATCCATGAAGCAAAAGGCTTCGGCATTACAAACCTACGCTTCAGGTCCATTACCCTCATCAATATCAAAACTTTCAGCTTCATCAAGAGGACTCCCCTCCGATAAAGACTTTCACTTTTACTACAACTTCGACGAATTCAAGCTCCCGATAGAGGAAATCGCCCATAAATCACAAACGGTGATGAATACGATAGGTAATTCGGCGCAATTGTGGGGGAAAGAGATGAGTTTGCCTATAGATTATGACGAGGATGATGATGGTGCTTATGATTGGCTTGTTAATGTGAATGATGAGGTGTTTGAGAGGTTCGATGTGTCGGTGGATGAGTTTAAGAGGTTAAGGAAGCAAGAGGAGGAGACTGGGGTAAGGGTTATGAGTTCAATGGCGGATAGTGAGAATGGGTTTCAGTTGGTTTATGGGAAGAAGAACAAGAAGAAAGATGGAGGTGTTGGTGCAGTTGCTGGTGGTGCTGATAACTCGGGTACATCGTCGGCAGTAAAGGTGGCTTCTAGGGACAAAAAGGCAATGGGGACAAAGTCGAAAGTGCCATTTCATATACCGACTATACCAAGACCCCAGGATGAGTTTAAGATACTGGTTAATAATTCTAATCAGCCCTTCGAGCATGTTTGGTTGCAGAGAAGTGAGGATGGTTCCAGGTTCATACATCCATTGGAGAAGTTTTCTTTCTTGGATTTTGTTGATAAAAATGTTGGTGATATAGAGCCTCTAAAACCATCTCCATTGGAGAGTACTCCATTCAAGCTTGTGGAAGAAGTAAAAGATTTGAAAGAACTAGCAGCAAAATTGCGTGTCGCCGACGAATTTTCGGTTGATTTGGAACATAATCACTATCGATCTTTCCAAGGACTGACTTGCCTGATGCAAATATCTACTAGGACGCATGATTTTGTTGTAGATACACTAAAGCTTCGCATTCACATTGGTCCGTATCTACGGGATGTTTTCAAAGATCCTACTAAGAAAAAGGTCATGCATGGATCAGATCGAGATATTATATGGCTACAGCGGGACTTTGGAATATATATCTGCAACATGTTTGATACTGGACAGGCTTCAAGGGTATTGAAAATGGAGAGAAACAGTCTGGAGTATCTGCTACAGCACTTTTGTGGAGTTACAGCAAATAAAGAGTACCAAAATGCAGACTGGAGATTACGCCCGCTTCCAGCCGAGATGGTTAGATATGCCAGAGAAGATACACACTATCTGTTGTATATGTATGATCTAATGAGAATCAGATTGCTTTCGTCAAGCACAGAGCCTGAATGTTCTGAAAATCCACTTGAGGAGGGGCTATCTGAATGGAGAGATGTTGTCGCACGTGCTGAAGATGAAAGTACTGGTTATATATTGCCAAACAAAACTCTCCTCGAGATTGCCAAACAGATGCCTGTAACTGCCAGCAAGTTGAGGCGACTGGTGATGTCAAAGCACCCGTATATCGAACGAAATCTGGGTTCAGTTGTTAGCATTATTAGGCACTCCATCCAAAATGCCTCTGCGTTTGAAGCTGTTGCTGAACAACTAAAAGAAGCGCGCGTGGAAAGGGCAACTGATGGGAATGCAACAAAAACAGAAAATGTTGGTGGCAGCAACTTAAAGAATGATACTTCATTCGGATCGCCATTTAAACAAAAGTCTTCTTTGGAAGTTGGAAGCACAACCACTACTGCCGGAGTAGGCAGAAATCAACATGAACAACGCTCTTCTGAGCATCATCCTCGAGATAATGGGAATATAGTAGCCCTTCCAAGAGACAGAGACATTAATGCTTCACATTCTGTTTCTGGAGCAGAAGCAACTGTTGAGGTGCTAAAGAAGCCGAGCCGTGCTTTTGGGGCTTTACTAGGGAATGCATCCACGAAAAGGAAATTTGATTCTGGTAAAAAGTGCTTCCAATCAACACCTGCTGCGCCCGAGTTGAAGCCATTTGACTATGAAGCAGCAAGAAAAGAGGTCCGATTTGGGGAAAGAAATGATGGAGAGGATGGTAGCGGTAACAATAATGGTAATAATAGCAGCAGTAGGCTTGATAGGAAGAATAGGAAAAAGCCGGAAGGCGGTGGTGAAGAGAGTGGAGATTTTCAGCAGGGTAGAAGACGGCAGGCTTTTCCGGCTAGCGGCAACCGGAGTGCTACTTTCCGGCGATAA

Network for GWHGAAZE003908

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08066.13	PMC2NT	33	118	7.60E-08
PF01612.21	DNA_pol_A_exo1	264	426	1.20E-39
PF00570.24	HRDC	446	498	4.60E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12591	RRP6, EXOSC10	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0006396	biological_process	RNA processing
GO:0044237	biological_process	cellular metabolic process
GO:0006139	biological_process	nucleobase-containing compound metabolic process
GO:0000176	cellular_component	nuclear exosome (RNase complex)
GO:0003676	molecular_function	nucleic acid binding
GO:0000166	molecular_function	nucleotide binding
GO:0003824	molecular_function	catalytic activity
GO:0008408	molecular_function	3'-5' exonuclease activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	35.328
	SRR3591706	second leaf	21.724
	SRR3591707	mature leaf	18.676
	SRR3591708	Shoot apex	37.152
	SRR3591709	Stem	29.659
	SRR3591710	White floral bud	28.048
	SRR3591711	White flower	29.882
	SRR3591712	Green floral bud	32.043
	SRR3591713	Yellow flower	21.748
SRP173429	SRR8316895	Juvenile bud stage	19.265
	SRR8316896	Juvenile bud stage	25.390
	SRR8316897	Juvenile bud stage	9.610
	SRR8316894	Third green stage	10.939
	SRR8316900	Third green stage	21.022
	SRR8316901	Third green stage	22.956
	SRR8316898	Complete white stage	5.735
	SRR8316899	Complete white stage	22.256
	SRR8316903	Complete white stage	14.254
	SRR8316902	Silver flowering stage	6.988
	SRR8316904	Silver flowering stage	11.165
	SRR8316905	Silver flowering stage	4.577
	SRR8316906	Gold flowering stage	13.032
	SRR8316907	Gold flowering stage	13.790
	SRR8316908	Gold flowering stage	15.310
SRP132670	SRR6706286	Control	21.868
	SRR6706287	Light intensity 50%	23.640
	SRR6706288	Light intensity 20%	24.172
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.621
	CNS0095593	Slightly white alabastrum(diploid) 2	17.930
	CNS0095594	Slightly white alabastrum(diploid) 3	19.404
	CNS0095595	Whole white alabastrum(diploid) 2	15.901
	CNS0095596	Whole white alabastrum(diploid) 3	15.172
	CNS0095597	Whole white alabastrum(diploid) 4	13.538
	CNS0095598	Silvery flower (diploied) 1	22.609
	CNS0095599	Silvery flower (diploied) 2	16.644
	CNS0095600	Silvery flower (diploied) 3	17.192
	CNS0095601	Golden flower (diploid) 1	18.235
	CNS0095602	Golden flower (diploid) 2	17.753
	CNS0095603	Golden flower (diploid) 3	18.281
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.673
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.654
	CNS0095606	Slightly white alabastrum(tetraploid) 3	37.969
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.079
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.389
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.231
	CNS0095610	Silvery flower (diploied) 1	19.233
	CNS0095611	Silvery flower (diploied) 2	19.940
	CNS0095612	Silvery flower (diploied) 3	13.992
	CNS0095613	Golden flower (tetraploid) 1	10.302
	CNS0095614	Golden flower (tetraploid) 2	15.850
	CNS0095615	Golden flower (tetraploid) 3	12.898
CRA001975	CRR073297	Stem 1	25.528
	CRR073298	Stem 2	22.646
	CRR073299	Stem 3	16.636
	CRR073300	Leaf 1	20.926
	CRR073301	Leaf 2	20.580
	CRR073302	Leaf 3	12.324
	CRR073303	Juvenile bud 1	14.929
	CRR073304	Juvenile bud 2	8.225
	CRR073305	Juvenile bud 3	17.652
	CRR073306	Third green 1	6.421
	CRR073307	Third green 2	3.472
	CRR073308	Third green 3	6.014
	CRR073309	Second white 1	3.821
	CRR073310	Second white 2	5.390
	CRR073311	Second white 3	5.547
	CRR073312	Silver flowering 1	3.649
	CRR073313	Silver flowering 2	4.398
	CRR073314	Silver flowering 3	4.824
	CRR073315	Gold flowering 1	5.995
	CRR073316	Gold flowering 2	11.270
	CRR073317	Gold flowering 3	6.550
	CRR073318	Tawny withering 1	16.131
	CRR073319	Tawny withering 2	14.177
	CRR073320	Tawny withering 3	16.141