Gene detail

Detail information of GWHGAAZE003932

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP17386.1	5.8671E-151	unnamed protein product [Coffea canephora]
COG	YP_004651717.1	1E-69	polyribonucleotide nucleotidyltransferase
Swissprot	tr\|Q69LE7\|PNP1_ORYSJ	6E-141	Probable polyribonucleotide nucleotidyltransferase 1, chloroplastic (Precursor)
trEMBL	tr\|A0A068V9P3\|A0A068V9P3_COFCA	2E-151	Coffea canephora DH200=94 genomic scaffold, scaffold_157 {ECO:0000313\|EMBL:CDP17386.1}
TAIR10	AT3G03710.1	1E-114	polyribonucleotide nucleotidyltransferase, putative

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	107265549	107275335	+
GWHAAZE00000001	mRNA	107265549	107275335	+
GWHAAZE00000001	exon	107265549	107265559	+
GWHAAZE00000001	exon	107266564	107266742	+
GWHAAZE00000001	exon	107266956	107267095	+
GWHAAZE00000001	exon	107269372	107269419	+
GWHAAZE00000001	exon	107269616	107269688	+
GWHAAZE00000001	exon	107271419	107271492	+
GWHAAZE00000001	exon	107271865	107271972	+
GWHAAZE00000001	exon	107272063	107272229	+
GWHAAZE00000001	exon	107272963	107273026	+
GWHAAZE00000001	exon	107273462	107273515	+
GWHAAZE00000001	exon	107273600	107273641	+
GWHAAZE00000001	exon	107274188	107274612	+
GWHAAZE00000001	exon	107274978	107275335	+
GWHAAZE00000001	CDS	107265549	107265559	+
GWHAAZE00000001	CDS	107266564	107266742	+
GWHAAZE00000001	CDS	107266956	107267095	+
GWHAAZE00000001	CDS	107269372	107269419	+
GWHAAZE00000001	CDS	107269616	107269688	+
GWHAAZE00000001	CDS	107271419	107271492	+
GWHAAZE00000001	CDS	107271865	107271972	+
GWHAAZE00000001	CDS	107272063	107272229	+
GWHAAZE00000001	CDS	107272963	107273026	+
GWHAAZE00000001	CDS	107273462	107273515	+
GWHAAZE00000001	CDS	107273600	107273641	+
GWHAAZE00000001	CDS	107274188	107274541	+
GWHAAZE00000001	three_prime_UTR	107274542	107274612	+
GWHAAZE00000001	three_prime_UTR	107274978	107275335	+

Transcript Sequence
>GWHTAAZE003938 ATGAACAATAGTACTCGTTTCCACCATCATGTGTTGGAGAAGTTGGGCGGATGGGTGCACCCAGTAGAAGAGAAATTGGTCATGGTATGCTTGCAGAAAGAGCCCTTGAACCTATATTGCCTTCTGAAGATCAATTCCCATACAGTATACGTGTTGAGAGTACAATCACTGAAAGCAATGGCTCGTCCAGGGGTTCCAGTAAAGAGCTCTATTGCAGGCATAGCAATGGGTATGGTTTTGGATACAAAAGAGGTTGGGGGAGATGGAACTCCTCTTATCCTATCTGACATAACAGGCTCTGAAGATGCTTCTGGAGATATGGATTTCAAGGTTGCTGGAAACGATGATGGTATAACTGCATTTCAGATGGACATAAAGGTAGGAGGAATTACTTTACCAATTATGGAGCAGGCTCTCCTGCAAGCAAGAGATGGGCGGAAGCATATTCTTGCTGAAATGTCGAAATGCTCACCTCCCCCTTCAGAAAGGCTTTCAAAGTATGCTCCACTCATTCATGTTATGAAGGTGAAACCGGAGAAAGTTAACCTTATTATTGGTGCTGGTGGGAAGAAAGTGAGGAGTATTATTGAGGACACGGGGGTAGACTATATCGATACAAGAGACGATGGAACTGTGAAAATAACTGCTAGGGATTTGTCCAGCCTAGAGAAGTCCAAAGCCATTATAAATAGTTTGACAATGGTACCAAGTGTTGGTGATATATATAGGTATATAAACGCGTATATATATATTGTTTCTTATAGTTTGACAATGGTACCAAGTGTTGGTGATGTATATAAGAACTGTGAGATCAAAACAATTGCTGCTTATGGAGCTTTTGTCGAGATAGCACCTGGCCGAGAGGGACTTTGCCATATTAGCGAGTTGAGTTCAGATTGGCTGGCGAAGACAGAAGATGCCTTCAAAGTCGGAGATCGTGTCGATGTCAAGCTCATTGAGATCAATGAAAAGGGACAGCTTAGGCTAAGTCGTAAGGCACTACTTCCTGTTCCTAGTCCAGATCAACCCAATGAAGATCAAAGTAACCTTACCAAAGACGTCGATGCCTCCCCAAAAGCTCTTGATAAGAGTAAACCTAAGAGAATTTTGATCACGACAAAGCCAACAGAAGAAAAAGAGGCTAAAAATAAATCAACAGATGAAAATCTCACGGAGAAGTCTGGGAAGAGATTAGGTGGTAGCGCTGCCAAGGATGGAACCTACGTTAACAAAGAGGGGTCAAAGAGTAGCAGCAGTAAACCTTTCATCCGTAAAAAAGAAAGTACATTAGTAAATGGAGAGGCCAAAGTTTGATGCAAATATATTCAAGTGATTTCACAGATTGAGAGGCCAAAGATGACCTACGACTCTACAATGACTTTAAGGTTCAGGTGTGTTTGCCCCACATCAGGGGCGAAACTGGAGACCGGCAGAGCATGCTTCACACCACCGCAACCAAAAAAGAGGAAAAAATGCAATTAATTAGCTATACATTAGAGAATTGATTTAACGACGTCAAATTTATAGCTAATTAGCTATACCTACAGGGGTCTTTTCTGTTATTTGTATTTAGGGCTATCCTTTATTACCTACTGTACCAGGATTTGTTTGCGCAGCCATACCATAGGCGAACCTCCCTTATTCGGTTATTCTGTCTCTCTTCAATCTTTTCATCCTGGAAATTAGGCATACGTCTCTGCATGAGAATTTCTATTTTTATTTTTATTTTTAGTAAATTCGAAG

Network for GWHGAAZE003932

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00013.30	KH_1	173	230	2.00E-06
PF00575.24	S1	262	332	2.20E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00962	pnp, PNPT1	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0003723	molecular_function	RNA binding
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.455
	SRR3591706	second leaf	17.373
	SRR3591707	mature leaf	17.025
	SRR3591708	Shoot apex	29.993
	SRR3591709	Stem	10.337
	SRR3591710	White floral bud	7.362
	SRR3591711	White flower	7.382
	SRR3591712	Green floral bud	12.945
	SRR3591713	Yellow flower	8.017
SRP173429	SRR8316895	Juvenile bud stage	9.658
	SRR8316896	Juvenile bud stage	11.827
	SRR8316897	Juvenile bud stage	5.535
	SRR8316894	Third green stage	5.191
	SRR8316900	Third green stage	15.809
	SRR8316901	Third green stage	11.687
	SRR8316898	Complete white stage	2.370
	SRR8316899	Complete white stage	9.472
	SRR8316903	Complete white stage	3.718
	SRR8316902	Silver flowering stage	1.741
	SRR8316904	Silver flowering stage	2.500
	SRR8316905	Silver flowering stage	1.327
	SRR8316906	Gold flowering stage	6.000
	SRR8316907	Gold flowering stage	4.887
	SRR8316908	Gold flowering stage	4.393
SRP132670	SRR6706286	Control	11.346
	SRR6706287	Light intensity 50%	11.011
	SRR6706288	Light intensity 20%	12.248
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.685
	CNS0095593	Slightly white alabastrum(diploid) 2	9.683
	CNS0095594	Slightly white alabastrum(diploid) 3	11.075
	CNS0095595	Whole white alabastrum(diploid) 2	8.530
	CNS0095596	Whole white alabastrum(diploid) 3	8.196
	CNS0095597	Whole white alabastrum(diploid) 4	8.223
	CNS0095598	Silvery flower (diploied) 1	14.617
	CNS0095599	Silvery flower (diploied) 2	10.467
	CNS0095600	Silvery flower (diploied) 3	8.796
	CNS0095601	Golden flower (diploid) 1	10.891
	CNS0095602	Golden flower (diploid) 2	10.216
	CNS0095603	Golden flower (diploid) 3	9.210
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.476
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.034
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.528
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.517
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.501
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.308
	CNS0095610	Silvery flower (diploied) 1	8.386
	CNS0095611	Silvery flower (diploied) 2	11.157
	CNS0095612	Silvery flower (diploied) 3	10.511
	CNS0095613	Golden flower (tetraploid) 1	7.023
	CNS0095614	Golden flower (tetraploid) 2	7.633
	CNS0095615	Golden flower (tetraploid) 3	6.941
CRA001975	CRR073297	Stem 1	15.473
	CRR073298	Stem 2	14.760
	CRR073299	Stem 3	11.959
	CRR073300	Leaf 1	14.286
	CRR073301	Leaf 2	14.194
	CRR073302	Leaf 3	8.784
	CRR073303	Juvenile bud 1	9.177
	CRR073304	Juvenile bud 2	6.388
	CRR073305	Juvenile bud 3	10.546
	CRR073306	Third green 1	1.637
	CRR073307	Third green 2	1.693
	CRR073308	Third green 3	1.789
	CRR073309	Second white 1	3.378
	CRR073310	Second white 2	3.421
	CRR073311	Second white 3	4.130
	CRR073312	Silver flowering 1	2.765
	CRR073313	Silver flowering 2	3.968
	CRR073314	Silver flowering 3	2.952
	CRR073315	Gold flowering 1	18.676
	CRR073316	Gold flowering 2	25.824
	CRR073317	Gold flowering 3	11.150
	CRR073318	Tawny withering 1	8.853
	CRR073319	Tawny withering 2	11.434
	CRR073320	Tawny withering 3	7.425