Gene detail

Detail information of GWHGAAZE004225

Functional Annotation

Database	Orthologs	Annotation
Nr	EYU20672.1	hypothetical protein MIMGU_mgv1a004180mg [Erythranthe guttata]
Swissprot	tr\|O22349\|TBA3_ELEIN	Tubulin alpha-3 chain
trEMBL	tr\|A0A022PWB6\|A0A022PWB6_ERYGU	Uncharacterized protein {ECO:0000313\|EMBL:EYU20672.1}
TAIR10	AT5G19770.1	tubulin alpha-3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	113583517	113588279	-
GWHAAZE00000001	mRNA	113583517	113588279	-
GWHAAZE00000001	exon	113588119	113588279	-
GWHAAZE00000001	exon	113586616	113586830	-
GWHAAZE00000001	exon	113586122	113586321	-
GWHAAZE00000001	exon	113585141	113585649	-
GWHAAZE00000001	exon	113583517	113583826	-
GWHAAZE00000001	five_prime_UTR	113588232	113588279	-
GWHAAZE00000001	CDS	113588119	113588231	-
GWHAAZE00000001	CDS	113586616	113586830	-
GWHAAZE00000001	CDS	113586122	113586321	-
GWHAAZE00000001	CDS	113585141	113585649	-
GWHAAZE00000001	CDS	113583517	113583826	-

Transcript Sequence
>GWHTAAZE004231 GGGGGGGGATTTTAGAAAAAGAAGGAATAAGGATATTTAGAGAGAGAGATGAGGGAGATAGTAAGCATTCACATAGGACAGGCTGGAGTTCAGGTTGGGAATTCTTGTTGGGAGCTTTACTGCCTTGAACATGGCATTCAACCTGATGGCATCATGCCCAGTGATGACTCAGTTGGTGAGGCCAACGATTCTTTCAACACCTTCTTCACCGAGAGCAGTTCCGGAAAACATGTCCCTAGGGCTATATTTGTTGATCTGGAGCCCACTGTTATCGATGAAGTTAGAACAGGAAAATACAGGCAACTCTTTCATCCTGAGCAACTTATGTCTGGCAAGGAGGATGCCGCCAATAACTTTGCCAGAGGACATTATACAGTGGGGAGAGATATTATTGATTTGTGTCTCGATCGAGTGAGGAAGTTAGCTGAAAACTGCACCGGCTTGCAAGGATTTTTGGTGTTTAATGCTGTTGGTGGTGGCACTGGTTCTGGTTTGGGGTCCTTGCTTCTAGAGCGCTTGTCTGTGGAGTACGGCAAGAAATCAAAACTCGGCTTCACTATCTATCCTTCTCCTCAGGTCTCTACTGCAGTTGTGGAGCCTTACAACAGTGTACTATCTACTCACTCCCTCCTAGAACACACCGACGTTGTGGTGCTCTTAGACAACGAAGCAATTTATGACATTTGCAGGCGAGCCTTAGACATAGAGAGGCCAAGTTACACCAACTTGAACCGATTAATTTCTCAAATCATCTCCTCCCTCACCACTTCCTTGAGGTTTGATGGAGCCATTAATGTAGACATAACGGAGTTCCAAACGAACCTTGTCCCGTATCCCCGCATACATTTCATGCTCTCTTCTTACGCCCCCGTTATCTCTGCTGCAAAAGCCTACCATGAGCAGAGCTCCGTTCCTGAGATCACCAATGCTGTTTTTGAGCCCTCAAGTATGATGGCCAAGTGTGACCCGAGGCATGGCAAGTATATGGCATGCTGCTTGATGTATAGGGGAGATGTTGTTCCTAAGGACGTCAATGCTGCTGTTGCCTCCATCAAGACAAAGCGGACCGTTCAGTTTGTTGACTGGTGCCCAACTGGTTTCAAATGTGGAATCAATTACCAGCCGCCAACAGTGGTCCCTGGGGGTGATCTTGCAAAGGGAAGACGCGCAGTCTGCATGATAAGCAACAACACATCCGTGGCTGAAGTGTTTGCAAGAATAGACCACAAATTCGATCTCATGTACGCAAAGCGCGCATTTGTACACTGGTACGTGGGTGAAGGCATGGAAGAAGGCGAGTTCTCAGAAGCCCGAGAGGATCTTGCTGCTCTCGAGAAAGACTATGAGGAAGTCGGGGCAGAAGAAGGCGATGAGGAAGATGAAGAAGAATATTGA

Network for GWHGAAZE004225

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00091.26	Tubulin	3	213	3.20E-68
PF03953.18	Tubulin_C	263	392	4.50E-51

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07374	TUBA	Phagosome	map04145
		Apoptosis	map04210
		Tight junction	map04530
		Gap junction	map04540

Gene Ontology

GO term	Ontology	Name
GO:0007017	biological_process	microtubule-based process
GO:0005874	cellular_component	microtubule
GO:0005200	molecular_function	structural constituent of cytoskeleton
GO:0005525	molecular_function	GTP binding
GO:0003924	molecular_function	GTPase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.815
	SRR3591706	second leaf	0.945
	SRR3591707	mature leaf	1.409
	SRR3591708	Shoot apex	1.709
	SRR3591709	Stem	1.280
	SRR3591710	White floral bud	275.072
	SRR3591711	White flower	11.802
	SRR3591712	Green floral bud	155.710
	SRR3591713	Yellow flower	10.400
SRP173429	SRR8316895	Juvenile bud stage	0.387
	SRR8316896	Juvenile bud stage	7.694
	SRR8316897	Juvenile bud stage	2.610
	SRR8316894	Third green stage	5.112
	SRR8316900	Third green stage	62.941
	SRR8316901	Third green stage	55.623
	SRR8316898	Complete white stage	0.483
	SRR8316899	Complete white stage	4.642
	SRR8316903	Complete white stage	0.566
	SRR8316902	Silver flowering stage	3.404
	SRR8316904	Silver flowering stage	7.145
	SRR8316905	Silver flowering stage	2.079
	SRR8316906	Gold flowering stage	1.182
	SRR8316907	Gold flowering stage	0.657
	SRR8316908	Gold flowering stage	0.950
SRP132670	SRR6706286	Control	53.262
	SRR6706287	Light intensity 50%	65.149
	SRR6706288	Light intensity 20%	57.707
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	39.420
	CNS0095593	Slightly white alabastrum(diploid) 2	36.406
	CNS0095594	Slightly white alabastrum(diploid) 3	34.767
	CNS0095595	Whole white alabastrum(diploid) 2	151.253
	CNS0095596	Whole white alabastrum(diploid) 3	174.057
	CNS0095597	Whole white alabastrum(diploid) 4	204.850
	CNS0095598	Silvery flower (diploied) 1	11.275
	CNS0095599	Silvery flower (diploied) 2	40.003
	CNS0095600	Silvery flower (diploied) 3	8.729
	CNS0095601	Golden flower (diploid) 1	12.648
	CNS0095602	Golden flower (diploid) 2	6.163
	CNS0095603	Golden flower (diploid) 3	6.757
	CNS0095604	Slightly white alabastrum(tetraploid) 1	89.581
	CNS0095605	Slightly white alabastrum(tetraploid) 2	90.871
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.244
	CNS0095607	Whole white alabastrum(tetraploid) 1	221.046
	CNS0095608	Whole white alabastrum(tetraploid) 2	288.141
	CNS0095609	Whole white alabastrum(tetraploid) 3	124.647
	CNS0095610	Silvery flower (diploied) 1	6.451
	CNS0095611	Silvery flower (diploied) 2	26.238
	CNS0095612	Silvery flower (diploied) 3	62.911
	CNS0095613	Golden flower (tetraploid) 1	9.178
	CNS0095614	Golden flower (tetraploid) 2	2.274
	CNS0095615	Golden flower (tetraploid) 3	33.227
CRA001975	CRR073297	Stem 1	14.662
	CRR073298	Stem 2	12.933
	CRR073299	Stem 3	4.894
	CRR073300	Leaf 1	102.692
	CRR073301	Leaf 2	59.619
	CRR073302	Leaf 3	34.077
	CRR073303	Juvenile bud 1	112.852
	CRR073304	Juvenile bud 2	84.901
	CRR073305	Juvenile bud 3	25.346
	CRR073306	Third green 1	62.048
	CRR073307	Third green 2	66.783
	CRR073308	Third green 3	66.959
	CRR073309	Second white 1	3.010
	CRR073310	Second white 2	12.156
	CRR073311	Second white 3	15.604
	CRR073312	Silver flowering 1	58.832
	CRR073313	Silver flowering 2	60.271
	CRR073314	Silver flowering 3	36.764
	CRR073315	Gold flowering 1	61.860
	CRR073316	Gold flowering 2	22.133
	CRR073317	Gold flowering 3	13.471
	CRR073318	Tawny withering 1	64.423
	CRR073319	Tawny withering 2	60.189
	CRR073320	Tawny withering 3	58.524