Detail information of GWHGAAZE004315


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCBI27235.30unnamed protein product [Vitis vinifera]
Swissprottr|Q7Y211|PP285_ARATH0Pentatricopeptide repeat-containing protein At3g57430, chloroplastic (Precursor)
trEMBLtr|F6HEX8|F6HEX8_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB51038.1}
TAIR10AT3G57430.10Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene115019236115021665+
GWHAAZE00000001mRNA115019236115021665+
GWHAAZE00000001exon115019236115019461+
GWHAAZE00000001exon115019765115020202+
GWHAAZE00000001exon115020536115021665+
GWHAAZE00000001CDS115019236115019461+
GWHAAZE00000001CDS115019765115020202+
GWHAAZE00000001CDS115020536115021665+
Transcript Sequence

Network for GWHGAAZE004315

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01535.21PPR50770.0047
PF13041.7PPR_2781243.00E-07
PF01535.21PPR1842096.10E-06
PF13041.7PPR_22833354.40E-08
PF01535.21PPR3683881.2
PF01535.21PPR4314590.011
PF14432.7DYW_deaminase4635874.30E-44
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.184
SRR3591706second leaf5.302
SRR3591707mature leaf6.181
SRR3591708Shoot apex3.268
SRR3591709Stem0.982
SRR3591710White floral bud2.122
SRR3591711White flower2.422
SRR3591712Green floral bud3.380
SRR3591713Yellow flower2.211
SRP173429 SRR8316895Juvenile bud stage 1.283
SRR8316896Juvenile bud stage 1.056
SRR8316897Juvenile bud stage 1.129
SRR8316894Third green stage 0.715
SRR8316900Third green stage 2.691
SRR8316901Third green stage 2.663
SRR8316898Complete white stage 0.533
SRR8316899Complete white stage 2.928
SRR8316903Complete white stage 0.951
SRR8316902Silver flowering stage0.820
SRR8316904Silver flowering stage0.784
SRR8316905Silver flowering stage0.340
SRR8316906Gold flowering stage 1.876
SRR8316907Gold flowering stage 1.002
SRR8316908Gold flowering stage 1.361
SRP132670SRR6706286Control1.923
SRR6706287Light intensity 50%2.127
SRR6706288Light intensity 20%2.096
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.116
CNS0095593Slightly white alabastrum(diploid) 22.261
CNS0095594Slightly white alabastrum(diploid) 32.248
CNS0095595Whole white alabastrum(diploid) 21.681
CNS0095596Whole white alabastrum(diploid) 31.823
CNS0095597Whole white alabastrum(diploid) 41.591
CNS0095598Silvery flower (diploied) 11.812
CNS0095599Silvery flower (diploied) 22.132
CNS0095600Silvery flower (diploied) 32.605
CNS0095601Golden flower (diploid) 11.626
CNS0095602Golden flower (diploid) 22.313
CNS0095603Golden flower (diploid) 32.192
CNS0095604Slightly white alabastrum(tetraploid) 12.881
CNS0095605Slightly white alabastrum(tetraploid) 22.628
CNS0095606Slightly white alabastrum(tetraploid) 33.559
CNS0095607Whole white alabastrum(tetraploid) 12.666
CNS0095608Whole white alabastrum(tetraploid) 22.445
CNS0095609Whole white alabastrum(tetraploid) 33.826
CNS0095610Silvery flower (diploied) 12.740
CNS0095611Silvery flower (diploied) 23.123
CNS0095612Silvery flower (diploied) 33.757
CNS0095613Golden flower (tetraploid) 10.907
CNS0095614Golden flower (tetraploid) 22.473
CNS0095615Golden flower (tetraploid) 30.746
CRA001975CRR073297Stem 13.565
CRR073298Stem 23.465
CRR073299Stem 32.966
CRR073300Leaf 13.237
CRR073301Leaf 23.307
CRR073302Leaf 32.183
CRR073303Juvenile bud 13.088
CRR073304Juvenile bud 22.931
CRR073305Juvenile bud 32.436
CRR073306Third green 10.722
CRR073307Third green 20.441
CRR073308Third green 30.498
CRR073309Second white 11.701
CRR073310Second white 21.706
CRR073311Second white 31.110
CRR073312Silver flowering 10.713
CRR073313Silver flowering 21.436
CRR073314Silver flowering 30.879
CRR073315Gold flowering 115.429
CRR073316Gold flowering 221.952
CRR073317Gold flowering 314.223
CRR073318Tawny withering 12.214
CRR073319Tawny withering 24.994
CRR073320Tawny withering 32.439