Gene detail

Detail information of GWHGAAZE004422

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002273835.2	0	PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Vitis vinifera]
Swissprot	tr\|Q8RXD4\|BRCA1_ARATH	2E-142	Protein BREAST CANCER SUSCEPTIBILITY 1 homolog
trEMBL	tr\|F6HLV5\|F6HLV5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55830.1}
TAIR10	AT4G21070.1	2E-114	breast cancer susceptibility1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	116732090	116738551	-
GWHAAZE00000001	mRNA	116732090	116738551	-
GWHAAZE00000001	exon	116732090	116732422	-
GWHAAZE00000001	exon	116732838	116732956	-
GWHAAZE00000001	exon	116733087	116733252	-
GWHAAZE00000001	exon	116733335	116733461	-
GWHAAZE00000001	exon	116733571	116733671	-
GWHAAZE00000001	exon	116733749	116733935	-
GWHAAZE00000001	exon	116734340	116734440	-
GWHAAZE00000001	exon	116734542	116735471	-
GWHAAZE00000001	exon	116735584	116735694	-
GWHAAZE00000001	exon	116736357	116736844	-
GWHAAZE00000001	exon	116737218	116737331	-
GWHAAZE00000001	exon	116737911	116737981	-
GWHAAZE00000001	exon	116738081	116738134	-
GWHAAZE00000001	exon	116738493	116738551	-
GWHAAZE00000001	CDS	116738493	116738551	-
GWHAAZE00000001	CDS	116738081	116738134	-
GWHAAZE00000001	CDS	116737911	116737981	-
GWHAAZE00000001	CDS	116737218	116737331	-
GWHAAZE00000001	CDS	116736357	116736844	-
GWHAAZE00000001	CDS	116735584	116735694	-
GWHAAZE00000001	CDS	116734542	116735471	-
GWHAAZE00000001	CDS	116734340	116734440	-
GWHAAZE00000001	CDS	116733749	116733935	-
GWHAAZE00000001	CDS	116733571	116733671	-
GWHAAZE00000001	CDS	116733335	116733461	-
GWHAAZE00000001	CDS	116733087	116733252	-
GWHAAZE00000001	CDS	116732838	116732956	-
GWHAAZE00000001	CDS	116732090	116732422	-

Transcript Sequence
>GWHTAAZE004428 ATGGCGGACTCTGCCGCAAACCTTGAGAAAATGGGCAGAGAGCTCAAGTGCCCCATCTGCTTGAGCCTACTGAGATCTGCAGTTTCACTCCCGTGTAACCATGTATTCTGCAATTTATGTATTGAGACATCTATGAAATCGGCTTCCGATTGTCCTGTTTGCAAAATTCCGTATCGGCGCCGAGAGGTTCGTCCTGCTCCTCACATGGATAACTTGGTGAGCATTTACAAGAGCATGGAAGTTGCTTCAGGAGTTAACATCTTCCTAACTCAAAATGCATCTTCAACCAAATTATCAGGTGAAGAGAAACAACTGGAAGGTGGTGATGTGGTCTATGGAACAGAAAAGAACGACATAGCTTGCAGAGAGACACCTAACCCAGAGAATTGGAGAAAATTCAAAGGAAAAGGGTCAAAAGGATCCTCTAAAGCCCAAAATTCTGGTTCAAAACCTGTAAGACCTTCCTTTCCAACAAAGAAAAGGGTTCAGGTGCCGCAGCATTCTCCTCCAGAGACCCCGATTAGGCCTAAAAAGCTTGAAAGTGGAATTGGTGAACACTCCAAAGATGGGCTTCAGAAGAATTTGGTTGTACTGAAGGACAAGCATGTTATGAATGAGAAAGGAGAGACATTGTTTACTCCATTCTTCTGGTTGAGGGAGGAAGAGGATGCAGAAAAGGTTACTCAGCTGACGAATGATAATGTGATTGATACACCACCTGATGCTCCTTGCTTCAGTGATATGAAAGATTCGGATGATGAAGTCCCTTGTAAATTGACTCCAAATAGTGGACCTTGTAATGCATCTCATGATGCCACTGTGTTTGATAGTGAAATGTTTGAATGGACACAAATACCTTGCTCTCCCGAGCTTTGTTCAAGTCCCACGAAATCTCAGATTAAAGAAACTGTTGAATATGATAGAATTCTGGAAAAGGAGTACAGATCTCCCTCACAAGAGACAACTAGAAATGGGGAATGTTGGGATAAAAAGAGAGGAAATACCAAAAATGCCAACAACGAAGGTGGAAATAAAAGATATTGCAAAAGAGGAAGGAAGGCAAGTGAAAGAACCCAAACAAAGCGAGCAAAGAAAAATATTGGGATTGATTCAGAGAAGGTAGCTGAAGAGAATGTTCAAGAGAAAAAGTGTGATGATAAAGGTACTTCACTAAATTTAAAAGGAAAATCCAATAAAGGGAGCAAGAAACTTTGCACTCATACTAGTGCTGCAGAGGTGATGCCAGAAAATGTCTCCACTTCAGCTGAGGGACCAAAGCCTCTGAATCAGGGTAATATACCAATGACTGCTGACCTGTCAGCTTCATTAGATGAGAAGGAAGGAATCCATGGGAGTCATCCCACAAAGAAAACTTGCAAAAAAAGTGGAAAAACAATAAAACGAAATCTTACTGCTTCTAAGAACAGCATAATTCGAAGCCAAAGAAATGAGGTTTCAATTTCCCAATCAAGAAGCGAATCTTTTCCTGCAGATGGTGATAAGACAGTTCTAGATTTGCGTAAAAAACCAAGAGAAAGTGAAACCAAGAGCATGAAGATTCCTCAATGTGATAAAAAGAAGAAATCTTCAAAGAAGGTGAAGTTTTCCACTGATGATAACCGCAAGAGTAAGTCGATGGATAACATTCAGAGTACGCACAAAAAGTTTACAAAGGGAAGTCCATTAGGAATGGTTTCTGGTGTAAGAATTATGGAGGATTCATCAATGGAGAAACTTCTTCCCTCTTTGAATGGAATTTTACGTAAATGCGAGGGAGTTACTAATAAAATCCAGTGTGCCTTTTGCCATTCAACAGAAGATACAGAGGCTTCTGGAGTCATGGTTCATTATCTAAAGGGCAAACCTGTCACCGAAAATTACGACAGTGGATCTAATGTTATACATGCACACAGAAACTGCACAGAATGGGCCCCAAATGTATATTTTGAAGATGAGAATGCCATCAACCTTGAAGCTGAATTAGCAAGAAGTAAGAGGATAAAATGCTGTTGTTGTGGTATAAAAGGGGCAGCTCTTGGGTGTTACGAGAAGACTTGTCGAAAGAGCTTTCACGTTCCTTGTGCAAAGTTAACCCCAGAATGTCAATGGGATAATGAAAACTTTGTTATGTTATGTCCTCTTCATGCCTCTTTCAAATTGCCAAATGAGATAGCTGGATCTCAGTTAAAGCAGATAAAGAAATGTGCCCACAAAAGACAATCTCAGACTGACCAATTGAAAGTTGTGCCTAAGCATGGTAGTAGCACCAGTTTGATGGGGAACTTATGTGGATCATTTGGAAAAATAGTTCTTTGCTGTTCAGCTCTCACAAGTGCAGAAAAGGAAACTGTTTCTGAATTTGAGAGATTATCCGGGGTTACATTACTGAAGAATTGGGATTCCAGTGTTACCCATGTCATTGCATCAACGGATGAGAATGCAGCATGCAGAAGAACCCTTAAATTTTTAATGGGTATTTTGGAGGGGAAGTGGATAGTCAGTATTGGGTGGGTTAAGGCTTGCTTAGAAGCCAAGAAACATGTCGATGAGCAGCCTTATGAAATTGCAGTTGACATTCATGGAATTAGGGACGGTCCTCGACTTGGAAGATTAAGACTTATAAACAAGCAACCAAAGCTTTTCAATGGTTATGATTTCTATTTTAGTGGAGATTACGTGGGTTCATACAAGGGATATTTACACGATCTTGTAGTTGCTGCTGGAGGAACAGTTCTGCACAGAAAGCCAATTTCAGAAATCCACAAAGACCTACCATCAACATTCATAATTTATAGCCTCGAGGTACCTGATAAGTGTGACCCAAGCAAGACAAAATTGATTATTAACCGTAGGAAGTCTGATGCTGACGCGCTAGCAAGTTCCAGTGGAGCTGTTGTAGCTACCAATTCGTGGATTTTGAACTCCATTGCTGCCTGTAGGCTGCAAAATCTTGAAAAATAG

Network for GWHGAAZE004422

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13923.7	zf-C3HC4_2	16	54	9.60E-10
PF13771.7	zf-HC5HC2H	637	715	7.20E-10
PF00533.27	BRCT	769	842	1.00E-05

Protein Sequence

>GWHPAAZE004425
MADSAANLEKMGRELKCPICLSLLRSAVSLPCNHVFCNLCIETSMKSASDCPVCKIPYRRREVRPAPHMDNLVSIYKSMEVASGVNIFLTQNASSTKLSGEEKQLEGGDVVYGTEKNDIACRETPNPENWRKFKGKGSKGSSKAQNSGSKPVRPSFPTKKRVQVPQHSPPETPIRPKKLESGIGEHSKDGLQKNLVVLKDKHVMNEKGETLFTPFFWLREEEDAEKVTQLTNDNVIDTPPDAPCFSDMKDSDDEVPCKLTPNSGPCNASHDATVFDSEMFEWTQIPCSPELCSSPTKSQIKETVEYDRILEKEYRSPSQETTRNGECWDKKRGNTKNANNEGGNKRYCKRGRKASERTQTKRAKKNIGIDSEKVAEENVQEKKCDDKGTSLNLKGKSNKGSKKLCTHTSAAEVMPENVSTSAEGPKPLNQGNIPMTADLSASLDEKEGIHGSHPTKKTCKKSGKTIKRNLTASKNSIIRSQRNEVSISQSRSESFPADGDKTVLDLRKKPRESETKSMKIPQCDKKKKSSKKVKFSTDDNRKSKSMDNIQSTHKKFTKGSPLGMVSGVRIMEDSSMEKLLPSLNGILRKCEGVTNKIQCAFCHSTEDTEASGVMVHYLKGKPVTENYDSGSNVIHAHRNCTEWAPNVYFEDENAINLEAELARSKRIKCCCCGIKGAALGCYEKTCRKSFHVPCAKLTPECQWDNENFVMLCPLHASFKLPNEIAGSQLKQIKKCAHKRQSQTDQLKVVPKHGSSTSLMGNLCGSFGKIVLCCSALTSAEKETVSEFERLSGVTLLKNWDSSVTHVIASTDENAACRRTLKFLMGILEGKWIVSIGWVKACLEAKKHVDEQPYEIAVDIHGIRDGPRLGRLRLINKQPKLFNGYDFYFSGDYVGSYKGYLHDLVVAAGGTVLHRKPISEIHKDLPSTFIIYSLEVPDKCDPSKTKLIINRRKSDADALASSSGAVVATNSWILNSIAACRLQNLEK

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
K10683	BARD1	Homologous recombination	map03440

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.777
	SRR3591706	second leaf	1.571
	SRR3591707	mature leaf	0.337
	SRR3591708	Shoot apex	17.987
	SRR3591709	Stem	2.612
	SRR3591710	White floral bud	0.675
	SRR3591711	White flower	0.253
	SRR3591712	Green floral bud	1.005
	SRR3591713	Yellow flower	0.054
SRP173429	SRR8316895	Juvenile bud stage	1.643
	SRR8316896	Juvenile bud stage	1.591
	SRR8316897	Juvenile bud stage	1.300
	SRR8316894	Third green stage	0.343
	SRR8316900	Third green stage	0.593
	SRR8316901	Third green stage	0.320
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.169
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.003
	SRR8316904	Silver flowering stage	0.001
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.215
	SRR6706287	Light intensity 50%	0.202
	SRR6706288	Light intensity 20%	0.234
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.353
	CNS0095593	Slightly white alabastrum(diploid) 2	0.571
	CNS0095594	Slightly white alabastrum(diploid) 3	0.892
	CNS0095595	Whole white alabastrum(diploid) 2	0.534
	CNS0095596	Whole white alabastrum(diploid) 3	0.346
	CNS0095597	Whole white alabastrum(diploid) 4	0.143
	CNS0095598	Silvery flower (diploied) 1	0.770
	CNS0095599	Silvery flower (diploied) 2	1.064
	CNS0095600	Silvery flower (diploied) 3	0.407
	CNS0095601	Golden flower (diploid) 1	0.462
	CNS0095602	Golden flower (diploid) 2	0.337
	CNS0095603	Golden flower (diploid) 3	0.140
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.719
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.739
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.104
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.908
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.157
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.296
	CNS0095610	Silvery flower (diploied) 1	0.022
	CNS0095611	Silvery flower (diploied) 2	0.072
	CNS0095612	Silvery flower (diploied) 3	0.040
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.030
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.165
	CRR073298	Stem 2	1.299
	CRR073299	Stem 3	1.946
	CRR073300	Leaf 1	0.163
	CRR073301	Leaf 2	0.217
	CRR073302	Leaf 3	0.041
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.137
	CRR073306	Third green 1	0.057
	CRR073307	Third green 2	0.054
	CRR073308	Third green 3	0.021
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.216
	CRR073316	Gold flowering 2	0.108
	CRR073317	Gold flowering 3	0.203
	CRR073318	Tawny withering 1	1.361
	CRR073319	Tawny withering 2	0.604
	CRR073320	Tawny withering 3	1.762