Gene detail

Detail information of GWHGAAZE004526

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP37946.1	0	hypothetical protein JCGZ_04589 [Jatropha curcas]
COG	YP_008595.1	8E-156	glycogen synthase
Swissprot	tr\|Q0WVX5\|SSY4_ARATH	0	Probable starch synthase 4, chloroplastic/amyloplastic (Precursor)
trEMBL	tr\|A0A067KNY8\|A0A067KNY8_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP37946.1}
TAIR10	AT4G18240.1	0	starch synthase 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	118399018	118407955	+
GWHAAZE00000001	mRNA	118399018	118407955	+
GWHAAZE00000001	exon	118399018	118399184	+
GWHAAZE00000001	exon	118400982	118401381	+
GWHAAZE00000001	exon	118402005	118402086	+
GWHAAZE00000001	exon	118402197	118403265	+
GWHAAZE00000001	exon	118403647	118403698	+
GWHAAZE00000001	exon	118404085	118404207	+
GWHAAZE00000001	exon	118404300	118404375	+
GWHAAZE00000001	exon	118404457	118404641	+
GWHAAZE00000001	exon	118404959	118405204	+
GWHAAZE00000001	exon	118405301	118405372	+
GWHAAZE00000001	exon	118405873	118406082	+
GWHAAZE00000001	exon	118406799	118406924	+
GWHAAZE00000001	exon	118407111	118407260	+
GWHAAZE00000001	exon	118407368	118407429	+
GWHAAZE00000001	exon	118407529	118407604	+
GWHAAZE00000001	exon	118407779	118407955	+
GWHAAZE00000001	CDS	118399018	118399184	+
GWHAAZE00000001	CDS	118400982	118401381	+
GWHAAZE00000001	CDS	118402005	118402086	+
GWHAAZE00000001	CDS	118402197	118403265	+
GWHAAZE00000001	CDS	118403647	118403698	+
GWHAAZE00000001	CDS	118404085	118404207	+
GWHAAZE00000001	CDS	118404300	118404375	+
GWHAAZE00000001	CDS	118404457	118404641	+
GWHAAZE00000001	CDS	118404959	118405204	+
GWHAAZE00000001	CDS	118405301	118405372	+
GWHAAZE00000001	CDS	118405873	118406082	+
GWHAAZE00000001	CDS	118406799	118406924	+
GWHAAZE00000001	CDS	118407111	118407260	+
GWHAAZE00000001	CDS	118407368	118407429	+
GWHAAZE00000001	CDS	118407529	118407604	+
GWHAAZE00000001	CDS	118407779	118407955	+

Transcript Sequence
>GWHTAAZE004532 ATGGCAGCTCAGCCATCAAGTTGCTTTATCAGCAGCAGCAATGGATGGAGAGGTGGAGTCCTGAGCAGCTATAAACGACACTTGGTTGTTGTTCGATTCTCTCCCTCCTTCCCTTCTCATCGTTTACTTCCTGTTTCCTGTAAGATGCGCCAGCGCAACTCCTCTAGTTCACAATATAAGAGACAACAACCAAAGAAAATCTTACCTGGACAGCTTCCAGCAGATGCAAACTTACAGCCAAACAGTGTTGAGGAGAGTAGCTCAGATAACTCTAACACAGATAGTATAGCAATCTTGAATCAAGATGCCATATCCAATGATGCTGTTGACACAACCATAGTAGTTGATCAACCAATGAAAATCTTACCTGGACAGCTTCCAGCAGATGCAAACTTACAGCCAAACACTGTTGAGGAGAGTAGCTCAGATAACTCTAAAACAGATAGTATAGCAATCTTGAATCAAGATGCCATATCTAATGATGCTGTTGACACAACCATAGTAGTTGAGCAATCAAATGGGAAAGATTCAGATGATCTAACTCTTCTGAATGAGATTAAATCTCCGTCCCTGGATGCAGATGGGGGAGAGCAGCTTTCAGGTGTTCATCTTCAAGATTTAATTGGGATGATAAGACAGGCGGAGAAAAATATTCATCTTCTCAACCAAGCTCGTGTACGCGCCCTTGAAGATCTTGAAAAGATTCTTGGTGAGAAGGAGGCTTTGCAAGGAGAAATTAACAGTTTAGAGATGAGACTGGCAGAAACTGATGCACGGATCAGAGTCGCTGCACAGGAAAAGGTACAAGTAGAACTTCTTGAAAATCAGTTGGAAGGGCTGCAGACTGAACTTTCTTCTAGAAGTGGTACTCAAGAAAACATGCACGATATCCATGATATAAACCCTATTACGCGCAAGAGTGGCGTTGACATTCTTAGCAAGGAGCTTAATTTGTTGAGGACCGAAAATATGTCGCTGAAGGATGATTTACAAGCACTTAAGGTGCAGGTCGGTAATGTGAAGCAAACAGATCAACGTATGGAAACGATGGAAAAAGAACGCTTGTTTTTAGAATCTTCTTTGAAAGAGTTGGAGTCCAAACTTGCTGTTTCTCAAGAAGATGTTTCCAAACTCTCTACTTTGAAATCCGAGTGCAAGAATTTATGGCAGAAGGTTGAACATTTGCAAGAATTGCTCGATAAGGCAACCAAGCAGGCAGATCAAGCTATCTTAGTGTTACAGCAAAACCAGGAGCTTCGAGTGAAAGTTGACAAGCTGGAAGAATCTCTAGAAGAGGCAAATATCTATAAGCTTTCATCTGAAAAATTACAGCAGTATAATGAACTGATGCAACAGAAGATAAAACTTCTCGATTTGCGTCTTCAAAGGTCCGATGAAGAGATATGTTCTTATGTACAGTTATATCAAGAATCTGTGGGGGAATTTCAAGAGACGCTTGACAGTTTGAAGGAAGAGAGCAAACGAAGAGCACTGGATGAACCGGTGGATGATATGCCTTGGGAATTTTGGAGCCAAATATTGCTTATGATTGATGGTTGGCTACTTGAGAAGAAAATTCTGACTGAAGATGCAAAGTTGTTGAGAGAAATGACGTGGAAGAGGGATGGACGCATTCGTGATGCATACATGGAATGCAAGGAAAAGAAGGAGCATGAAGCTATTGCTCTATTTCTGAAATCGACATCATCACTGATGCGTGCAGGATTGCATGTCATTCACATTGCAGCTGAGATGGCACCAGTTGCTAAGGTTGGTGGTCTGGGGGATGTCTTGACTGGTCTTAGTAAGGCGCTGCAAAAGAAAGGACACCTTGTGGAAATTATTCTTCCTAAATATGATTGTATGCAATATGAACGTATTCGTGACTTGAGGGTCTTAGATCTGGTGGTAGAGTCATACTTTGAAGGCCGGTTGTTCAAAAATAAAATCTGGGTTGGGACTGTTGAAGGCCTGCCTGTCTATTTTATTGAGCCTCATCATCCGGGTAATTTGTTCTGGAGAGGACAATTGTATGGGGAAAATGATGACTTCAAGCGTTTCTCGTTCTTTAGCAGGGCAGCACTTGAATTGATTTTTCAAGCTGGCAAGAAACCCGACATAATTCATTGCCACGATTGGCAGACTGCTTTCGTCTTGACTTTTGATTTAGTATACACTTACACTAGATTTTTTTGTACTGTCAAGGCACCACTCTATTGGGATATATATGCACCGAAAGGACTGAATTCAGCAAGAATATGTTTCACATGCCACAATTTTGAGTATCAAGGGACTGCCCCAGCTTCAGACTTAGCATCTTGTGGTCTTGATGTTCACCACCTAAATAGACCAGATAGGATGCAGGACCACTCATCACGGGACAGGGTCAACCCCGTTAAGGGTGCAGTTGTGTTCTCTAACATTGTGACAACAGTATCACCAACCTATGCACAAGAAGTGCGCACTGCTGAGGGAGGACAAGGTCTTCATGCAACCCTTAACTCTCACTCGAAAAAGTTTGTTGGAATTCTGAATGGAATTGATACTGATGCATGGAATCCAGCAACTGACACTTTCCTCAAAGTCCAGTACAGTGCTAATGATATGGAGGGAAAAGCGGAGAATAAAGAAGCTTTAAGAAGTCATCTTAGGCTTTCTTCTGCTGATGTCCAGAGGCCATTGGTTGGCTGCATAACAAGATTAGTGCCTCAAAAGGGTGTGCATCTGATTAGGCATGCTATTTATAGGACACTAGAACTTGGAGGACAGTTTGTACTTCTTGGATCGAGCCCGGTGCCACACATTCATAGGGAATTTGAGGGTATTGCAAACCATTTCCAGAGCCACGAACATGTTAGGTTGATATTGAAGTATGACGAGTCTCTTTCCCACATAATTTATGCAGCATCCGACTTGTTCATCATCCCATCTATCTTTGAGCCTTGTGGCCTTACACAGATGATAGCAATGAGATATGGTTCGATACCTATAGCCCGAAAAACCGGGGGTCTAAATGACAGTGTTTTCGACATTGAAGATGATGCTATACCCACTCAGTTTAGAAATGGATTTACATTTTTGACACCCGATGAACGGGGAGTCAACGATGCATTGGAACGAGCACTTAACTACTATAAGAATGATAGTGGGGGTTGGCGACAGCTTGTGGAGAAGGATATGAATATAGACTTCAGTTGGGACACATCAGCCTCACAATATGTGGAACTTTACGAAAAGTCTGTAGCCAGAGCTAGGTCATCAAATCGAACTTGA

Network for GWHGAAZE004526

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08323.12	Glyco_transf_5	577	834	2.90E-59
PF00534.21	Glycos_transf_1	890	1043	7.60E-09

Protein Sequence

>GWHPAAZE004529
MAAQPSSCFISSSNGWRGGVLSSYKRHLVVVRFSPSFPSHRLLPVSCKMRQRNSSSSQYKRQQPKKILPGQLPADANLQPNSVEESSSDNSNTDSIAILNQDAISNDAVDTTIVVDQPMKILPGQLPADANLQPNTVEESSSDNSKTDSIAILNQDAISNDAVDTTIVVEQSNGKDSDDLTLLNEIKSPSLDADGGEQLSGVHLQDLIGMIRQAEKNIHLLNQARVRALEDLEKILGEKEALQGEINSLEMRLAETDARIRVAAQEKVQVELLENQLEGLQTELSSRSGTQENMHDIHDINPITRKSGVDILSKELNLLRTENMSLKDDLQALKVQVGNVKQTDQRMETMEKERLFLESSLKELESKLAVSQEDVSKLSTLKSECKNLWQKVEHLQELLDKATKQADQAILVLQQNQELRVKVDKLEESLEEANIYKLSSEKLQQYNELMQQKIKLLDLRLQRSDEEICSYVQLYQESVGEFQETLDSLKEESKRRALDEPVDDMPWEFWSQILLMIDGWLLEKKILTEDAKLLREMTWKRDGRIRDAYMECKEKKEHEAIALFLKSTSSLMRAGLHVIHIAAEMAPVAKVGGLGDVLTGLSKALQKKGHLVEIILPKYDCMQYERIRDLRVLDLVVESYFEGRLFKNKIWVGTVEGLPVYFIEPHHPGNLFWRGQLYGENDDFKRFSFFSRAALELIFQAGKKPDIIHCHDWQTAFVLTFDLVYTYTRFFCTVKAPLYWDIYAPKGLNSARICFTCHNFEYQGTAPASDLASCGLDVHHLNRPDRMQDHSSRDRVNPVKGAVVFSNIVTTVSPTYAQEVRTAEGGQGLHATLNSHSKKFVGILNGIDTDAWNPATDTFLKVQYSANDMEGKAENKEALRSHLRLSSADVQRPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFVLLGSSPVPHIHREFEGIANHFQSHEHVRLILKYDESLSHIIYAASDLFIIPSIFEPCGLTQMIAMRYGSIPIARKTGGLNDSVFDIEDDAIPTQFRNGFTFLTPDERGVNDALERALNYYKNDSGGWRQLVEKDMNIDFSWDTSASQYVELYEKSVARARSSNRT

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00703	glgA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500
		Biofilm formation - Escherichia coli	map02026

Gene Ontology

GO term	Ontology	Name
GO:0004373	molecular_function	glycogen (starch) synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.182
	SRR3591706	second leaf	23.523
	SRR3591707	mature leaf	35.051
	SRR3591708	Shoot apex	30.964
	SRR3591709	Stem	21.043
	SRR3591710	White floral bud	11.526
	SRR3591711	White flower	12.199
	SRR3591712	Green floral bud	8.201
	SRR3591713	Yellow flower	11.946
SRP173429	SRR8316895	Juvenile bud stage	6.683
	SRR8316896	Juvenile bud stage	7.826
	SRR8316897	Juvenile bud stage	4.084
	SRR8316894	Third green stage	3.547
	SRR8316900	Third green stage	7.054
	SRR8316901	Third green stage	7.093
	SRR8316898	Complete white stage	2.755
	SRR8316899	Complete white stage	10.703
	SRR8316903	Complete white stage	8.211
	SRR8316902	Silver flowering stage	2.550
	SRR8316904	Silver flowering stage	5.301
	SRR8316905	Silver flowering stage	2.207
	SRR8316906	Gold flowering stage	6.242
	SRR8316907	Gold flowering stage	5.591
	SRR8316908	Gold flowering stage	4.596
SRP132670	SRR6706286	Control	7.769
	SRR6706287	Light intensity 50%	7.791
	SRR6706288	Light intensity 20%	7.758
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.579
	CNS0095593	Slightly white alabastrum(diploid) 2	3.672
	CNS0095594	Slightly white alabastrum(diploid) 3	4.246
	CNS0095595	Whole white alabastrum(diploid) 2	2.691
	CNS0095596	Whole white alabastrum(diploid) 3	1.673
	CNS0095597	Whole white alabastrum(diploid) 4	3.281
	CNS0095598	Silvery flower (diploied) 1	7.865
	CNS0095599	Silvery flower (diploied) 2	5.893
	CNS0095600	Silvery flower (diploied) 3	10.299
	CNS0095601	Golden flower (diploid) 1	7.043
	CNS0095602	Golden flower (diploid) 2	9.863
	CNS0095603	Golden flower (diploid) 3	9.639
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.349
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.303
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.277
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.386
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.148
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.438
	CNS0095610	Silvery flower (diploied) 1	12.920
	CNS0095611	Silvery flower (diploied) 2	12.903
	CNS0095612	Silvery flower (diploied) 3	4.185
	CNS0095613	Golden flower (tetraploid) 1	3.125
	CNS0095614	Golden flower (tetraploid) 2	7.966
	CNS0095615	Golden flower (tetraploid) 3	9.248
CRA001975	CRR073297	Stem 1	13.862
	CRR073298	Stem 2	10.235
	CRR073299	Stem 3	7.599
	CRR073300	Leaf 1	8.926
	CRR073301	Leaf 2	8.345
	CRR073302	Leaf 3	5.956
	CRR073303	Juvenile bud 1	6.858
	CRR073304	Juvenile bud 2	5.069
	CRR073305	Juvenile bud 3	10.104
	CRR073306	Third green 1	0.989
	CRR073307	Third green 2	0.654
	CRR073308	Third green 3	0.826
	CRR073309	Second white 1	0.529
	CRR073310	Second white 2	1.139
	CRR073311	Second white 3	0.836
	CRR073312	Silver flowering 1	0.503
	CRR073313	Silver flowering 2	0.570
	CRR073314	Silver flowering 3	0.710
	CRR073315	Gold flowering 1	10.137
	CRR073316	Gold flowering 2	21.696
	CRR073317	Gold flowering 3	6.079
	CRR073318	Tawny withering 1	9.299
	CRR073319	Tawny withering 2	7.430
	CRR073320	Tawny withering 3	7.012