Gene detail

Detail information of GWHGAAZE004560

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP08328.1	0	unnamed protein product [Coffea canephora]
COG	YP_004346025.1	5E-165	squalene/oxidosqualene cyclase
Swissprot	tr\|Q8W3Z1\|BAMS_BETPL	0	Beta-amyrin synthase
trEMBL	tr\|A0A068UL42\|A0A068UL42_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_31 {ECO:0000313\|EMBL:CDP08328.1}
TAIR10	AT1G78955.1	0	camelliol C synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	118828850	118836555	-
GWHAAZE00000001	mRNA	118828850	118836555	-
GWHAAZE00000001	exon	118828850	118828975	-
GWHAAZE00000001	exon	118829236	118829319	-
GWHAAZE00000001	exon	118829606	118829686	-
GWHAAZE00000001	exon	118829770	118829947	-
GWHAAZE00000001	exon	118830060	118830203	-
GWHAAZE00000001	exon	118830308	118830354	-
GWHAAZE00000001	exon	118830473	118830529	-
GWHAAZE00000001	exon	118830632	118830730	-
GWHAAZE00000001	exon	118830830	118830952	-
GWHAAZE00000001	exon	118831123	118831242	-
GWHAAZE00000001	exon	118831404	118831523	-
GWHAAZE00000001	exon	118831646	118831834	-
GWHAAZE00000001	exon	118832002	118832168	-
GWHAAZE00000001	exon	118832400	118832484	-
GWHAAZE00000001	exon	118835406	118835603	-
GWHAAZE00000001	exon	118835707	118835796	-
GWHAAZE00000001	exon	118835932	118836120	-
GWHAAZE00000001	exon	118836358	118836555	-
GWHAAZE00000001	CDS	118836358	118836555	-
GWHAAZE00000001	CDS	118835932	118836120	-
GWHAAZE00000001	CDS	118835707	118835796	-
GWHAAZE00000001	CDS	118835406	118835603	-
GWHAAZE00000001	CDS	118832400	118832484	-
GWHAAZE00000001	CDS	118832002	118832168	-
GWHAAZE00000001	CDS	118831646	118831834	-
GWHAAZE00000001	CDS	118831404	118831523	-
GWHAAZE00000001	CDS	118831123	118831242	-
GWHAAZE00000001	CDS	118830830	118830952	-
GWHAAZE00000001	CDS	118830632	118830730	-
GWHAAZE00000001	CDS	118830473	118830529	-
GWHAAZE00000001	CDS	118830308	118830354	-
GWHAAZE00000001	CDS	118830060	118830203	-
GWHAAZE00000001	CDS	118829770	118829947	-
GWHAAZE00000001	CDS	118829606	118829686	-
GWHAAZE00000001	CDS	118829236	118829319	-
GWHAAZE00000001	CDS	118828850	118828975	-

Transcript Sequence
>GWHTAAZE004566 ATGTGGAAGTTGAAAGTGGGAGAAGGTAAAGGATCGTGGCTGAGTAGTACTAACAATTTTGTTGGTAGGCAAATTTGGGAGTATGAAGCCAATGAAGGTAGCCCAGAAGAGAGAGATATGGTTGAAAAAGCCAGAGATTTGTACCATCAAAATCGTTTTGTAGTGAAACCAAGCTCTGATCTTCTCATGCAAATGCAGCTTATCAAAGAAAACAAAATTGATCTAACTAGCACTCCTGTTGTGAGAGTGGGAACCACTGAAGAAGTAACTGATGAAATAGTTAAAATCGTTCTAAGGAAAGCTGTTCGCTTAACTTCGTCCATTCAAGCACATGATGGACACTGGCCTGCTGAAAATTCAGGCCCCTTGTTCTACACGCCTCCCCTTATCATGCTTCTGTACCTTAGTGGAACAACGAATTCAGTTCTATCACCGGAACACAGAAAGGAGATTATTCGCCACATATACAATCATCAGAACAAAGACGGGGGATGGGGATTTCACATAGAGGGGCATAGCACCATGCTTTCCACAGCTTACAACTATATTGCCTTGCGCTTGCTTGGAGAAGGAGCTGATGGAAGTGATCAAGGGGCTCTTGGGGAAGGCCGGAGATGGATACTTGATCATGGCAGCCTAACTATGATACCCTCATGGGGAAAGATTGTTCTTTCGGTCCTTGGCGTGTATGAGTGGCCAGGTTGCAACCCGGTGCCCCCAGAACTTTTCCTTTTACCTTCATATCTGCCGCTTCATCCAGCAAAAATATGGTGCTATGCTCGTGATACAAGCTTGACATTGTCATATTTGTATGGAAAGAAATATGTCGGGCCGATCACTGATCTCATTTTATCATTGAGAGAAGAACTTTACACCCAACCTTATGAGAATATTGATTGGGCAAAAACTCGCTATAAGATTGCAGAGGAGGATATTTACACTCCTCATTCCTTGATTCAAGATGTGATCTGGGAGGCACTTTATTACATTGGGGAGCCACTTCTCAACTGTTGGCCCTTCTCCAAACTTAGAGAGAAAGCTCTACTAAAAGTAATGAATCACATTCATTATGAAGATGAGAATAGCAGATACTTAACAATTGCATGCGTACAGAAGGTTTTCCATATGATGGCTTGTTGGGTGGAAGAACAAAATTCAAATTCAAGCGCGTATAAGCGTCACCTTGCTAGACTTCCCGATTACTTGTGGGTTGCTGAAGACGGAATGAAAGTGCAGAGTTTGGGTTCTCAGTTGTGGGATGCTGTTTTTGCTACTCAAGCTATTATTGCAAGTAATCTCGAAGACGAGTTTGGGACTACCCTGAAAAGGGCTCATAATTTCCTTAAACAAACACAGATTCAAGAAAATCCATGTGGTGACTTCCATAGCATGTATCGCCACAAATCTAAAGGAGGTTGGCCTTTATCTGAACAAGATCATGGTTGGCAAGTATCTGACTGTACAGCTGAAGCATTGAAGGCATTACTCCTACTCTCACAAATGTCACCCGAAATTGCAGGCAAAAAAATTGAAATTAACAGATTATATGAAGCTGTGGATTTTCTTCTCCCTTTTCAGAGCAAAAATGGAGGTTTTGCTATTTGGGAGCCAACAACTTCACCAAAATGGCTAGAGTTTTTGAATTCTTCTGAAGTTTTTGGCAATGCTTTTGTCGAGCATGAGTATGTTGAATGCGCATCATCCATAGTCCAAGCTCTAGTCCTGTTTCAACGTTTGTATCCAGAATATCGATATAAAGAAATAAAAGTTTCTGTGGCAAGAGCTATACAATTTATTGAAAAGACTCAAGCTCCAGATGGTTCTTGGTATGGGTACTGGGCAGTATGCTACACCTACGCTACGTGGTTCGCATTGAAAGGATTAGTATCTGTTGGGTTGACATATTCCACAAGCCAAACTATCCGTAAAGCCACCGAGTTTTTGCTATCAACACAACTGGACTGTGGTGGTTGGGGAGAAAGCTATCTTTCTTGTTATCATGTGAAATACACGCCGCTTAAGGGAGAGCAATCAAATTTAGTACAAACATCATGGGCCCTAATGGCTCTCATTCTTGCCGGGCAGGCTGAGAGAGATCCGGTACCTTTACATAAAGCAGCAAAGTTGTTAATTAACTCGCAGACGGAAAAGGGTGACTTTCCTCAACAGGAGATCACTGGGGCTTCCATGGGGAACTGCATTCTACATTATGCGTCGCACAGGAACGTGTTTCCGCTGTGGGCCCTTGGAGAATATCGTACACATGTCCTATTGCGTTCTTCCCAAAACATCTAA

Network for GWHGAAZE004560

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13249.7	SQHop_cyclase_N	99	406	1.40E-38
PF13243.7	SQHop_cyclase_C	416	753	2.10E-48

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15813	LUP4	Biosynthesis of secondary metabolites	map01110
K15813	LUP4	Sesquiterpenoid and triterpenoid biosynthesis	map00909

Gene Ontology

GO term	Ontology	Name
GO:0016104	biological_process	triterpenoid biosynthetic process
GO:0005811	cellular_component	lipid droplet
GO:0000250	molecular_function	lanosterol synthase activity
GO:0016866	molecular_function	intramolecular transferase activity
GO:0042300	molecular_function	beta-amyrin synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.267
	SRR3591711	White flower	0.088
	SRR3591712	Green floral bud	0.101
	SRR3591713	Yellow flower	0.138
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.023
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.005
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.052
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.048
	SRR8316903	Complete white stage	0.072
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.121
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.035
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.299
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.033
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.027
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (diploied) 1	0.022
	CNS0095611	Silvery flower (diploied) 2	0.061
	CNS0095612	Silvery flower (diploied) 3	0.093
	CNS0095613	Golden flower (tetraploid) 1	0.023
	CNS0095614	Golden flower (tetraploid) 2	0.117
	CNS0095615	Golden flower (tetraploid) 3	0.021
CRA001975	CRR073297	Stem 1	0.034
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.073
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.074
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000