Gene detail

Detail information of GWHGAAZE004590

Functional Annotation

Database	Orthologs	Annotation
Nr	CBI30675.3	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q94CD5\|ATG7_ARATH	Ubiquitin-like modifier-activating enzyme atg7
trEMBL	tr\|F6HM90\|F6HM90_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55678.1}
TAIR10	AT5G45900.1	ThiF family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	119357814	119362648	+
GWHAAZE00000001	mRNA	119357814	119362648	+
GWHAAZE00000001	exon	119357814	119357949	+
GWHAAZE00000001	exon	119358560	119358777	+
GWHAAZE00000001	exon	119358868	119359059	+
GWHAAZE00000001	exon	119359156	119359210	+
GWHAAZE00000001	exon	119359302	119359396	+
GWHAAZE00000001	exon	119359510	119359699	+
GWHAAZE00000001	exon	119359807	119359915	+
GWHAAZE00000001	exon	119360748	119360892	+
GWHAAZE00000001	exon	119361038	119361196	+
GWHAAZE00000001	exon	119361296	119361484	+
GWHAAZE00000001	exon	119361584	119361775	+
GWHAAZE00000001	exon	119361865	119361980	+
GWHAAZE00000001	exon	119362128	119362287	+
GWHAAZE00000001	exon	119362478	119362648	+
GWHAAZE00000001	CDS	119357814	119357949	+
GWHAAZE00000001	CDS	119358560	119358777	+
GWHAAZE00000001	CDS	119358868	119359059	+
GWHAAZE00000001	CDS	119359156	119359210	+
GWHAAZE00000001	CDS	119359302	119359396	+
GWHAAZE00000001	CDS	119359510	119359699	+
GWHAAZE00000001	CDS	119359807	119359915	+
GWHAAZE00000001	CDS	119360748	119360892	+
GWHAAZE00000001	CDS	119361038	119361196	+
GWHAAZE00000001	CDS	119361296	119361484	+
GWHAAZE00000001	CDS	119361584	119361775	+
GWHAAZE00000001	CDS	119361865	119361980	+
GWHAAZE00000001	CDS	119362128	119362287	+
GWHAAZE00000001	CDS	119362478	119362648	+

Transcript Sequence
>GWHTAAZE004596 ATGGTTGGACATGAGAATGGATCTATTCTTCAATTTGCACCCTTCCAGATCCATGTAGATGAGGGATTTTGGCATAGATTGTCTTCATTGAAGCTCAACGAATTGGGAATTGACGATTCTCCGATTCCCCTCACTGGTTTCTATGCACCTTGCTTTGATTCACGAACATCAAATCCATTTAATCTTTTTACCGAGTCTTTGCCGCCTGAACCAAGTGAGCAATCATTGATACCAGCAATAAGTCATGGTAACAGGAACCGATGCCCCGTCCCTGGCATTCTTTATAACACAAACACATTGGAGGGCTTCAAGGCCCTTGATAAACAGAGCTTGCTAAAGGCTGAAGCAAAAAAGATCTGGGAGGATATTCACTCCGGGAAAGCTGAAGAGGACAGTGCAGTACTTTCAAGGTTCCTTGTTATATCATTTTCAGACCTGAAAAAGTGGCACTTCCGTTGCTCAATTGCTTTCCCTGCTCTGGTTCTTGATCCTCCAGCAACCTTGGTTGATTTAAGGCCAGCTTCCCAGTGTTTCACCGAAGAAGAGGCCGAATCCCTGTCAGCAGCTTGTAATGAGTGGCGTAATTCTAGGTCAACAACAGATGCGCCGTTCTTTCTTGTGTCCATTGCTTCAAATTCATGTATCACTGTTAGGCATCTGAAGGACTGGGAAGCTTGCCAACGTGATGGTCATAAGTTGCTATTTGCTTTTTATGACCCCTGTCATCTTCCGGATAATCCTGGCTGGCCTCTTCGCAACTTTCTTTCATTTATTTTTGTGAGATGGAATCTTAAGAAAGTTCGCTTTTTATGCTATCGGGAGAGCCGTGGCTTTGCTGATTTAGAGTTGTCTCTTGTCGGTGAAGCTTCGATATCCGTTCCACAAGGATGGAAAGATCATCAACATATGCCTCATGCTGTGGGATGGGAACTTACAAAAGAGAGGAAACCGAAACTTAGGCTTATTAAACTTGCTACATCCATGGATCCAACAATGCTATCGATATCAGCTGCAGATCTGAATCTAAAACTAATGCGATGGCGTGCTTTGCCATCATTGGACCTAAATACTTTGTATGCTACTAAATGCCTTCTGCTAGGAGCTGGAACACTTGGATGCCAGGTTGCTCGCTTGCTTATGGCTTGGGGTGTCCGGAAAATTACACTAGTTGATAGCGGCAAGGTAGCTATGTCTAATCCATTGAGGCAATCTCTGTATACATTGGAGGACTGCCTTAATGGTGGTGAGTTTAAGGCCACAGCAGCAGCTAAAAGGCTCAAGCTAATATTTCCGGGATCGGAAGCAGAAGGTGTTGTGATGACAATACCGATGCCTGGGCATCCTGTGCCCACTGATGACGAGAATAAAGCGCTTGAGGATTGTAGACGCTTACATGATTTAGTTGATTCTCATGATGCGGTTTTCTTATTGACTGATACAAGGGAAAGTCGATGGCTTCCAACTCTTCTTTGTTCCAATGCTAACAAGATTACAGTAACTGCAGCTTTAGGTTTTGAAAGCTTCTTGGTTATGCGCCATGGTGCTGGTCCTCCCAGATCTGTTGAAATCGAATCCGTGGATGCTTTAGCCACTAAAATTGGAAACACCTCACTCAGAGACACAGATGGAGGGCAGAGATTGGGTTGTTACTTCTGCAATGATGTTGTTGCTCCAGTTGATTCTACTGCCAACCGTACATTGGACCAGCAATGCACGGTTACACGTCCAGGACTTGCTCCTATTGCATCATCCCTTGCAGTTGAACTTTTAGTTGGGATTTTGCATCATCCTTTTGGGATATATGCCAAAGCTGAGTTTGCTAATGCTATTGTTAGTGGAAGCACTGAGCAACCTCTTGGTATATTACCCCATCAAATTCGAGGCTCCCTCTCCCAGTTTTCTCAGATGACACTTGTGGGTCACTCCTCAAATAGTTGTACGGCTTGTTGCAACATTGTGGTGTCTGAATATCGAAAAAGGGGGATGGAATTCATCCTTGAAGCCATCAATCATCCCACCTTTTTGGAGGATCTAACTGGACTAACAGAGCTAATGAAGTCCGCTAGCGCTTTTGAACTGGACTGGGATAATGAGACTGATATTGATGATGAATGCCTTGAAATCTGA

Network for GWHGAAZE004590

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16420.6	ATG7_N	10	328	1.00E-91
PF00899.22	ThiF	354	647	7.30E-41

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	ThiF

KEGG pathway

KO	Enzyme	pathway	mapID
K08337	ATG7	Autophagy - animal	map04140
		Autophagy - yeast	map04138
		Autophagy - other	map04136
		Ferroptosis	map04216

Gene Ontology

GO term	Ontology	Name
GO:0006914	biological_process	autophagy
GO:0005737	cellular_component	cytoplasm
GO:0008641	molecular_function	ubiquitin-like modifier activating enzyme activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.612
	SRR3591706	second leaf	17.547
	SRR3591707	mature leaf	21.502
	SRR3591708	Shoot apex	23.942
	SRR3591709	Stem	21.251
	SRR3591710	White floral bud	20.322
	SRR3591711	White flower	50.509
	SRR3591712	Green floral bud	18.812
	SRR3591713	Yellow flower	164.750
SRP173429	SRR8316895	Juvenile bud stage	11.572
	SRR8316896	Juvenile bud stage	13.736
	SRR8316897	Juvenile bud stage	7.502
	SRR8316894	Third green stage	7.444
	SRR8316900	Third green stage	17.622
	SRR8316901	Third green stage	14.933
	SRR8316898	Complete white stage	8.369
	SRR8316899	Complete white stage	24.040
	SRR8316903	Complete white stage	13.845
	SRR8316902	Silver flowering stage	13.633
	SRR8316904	Silver flowering stage	18.209
	SRR8316905	Silver flowering stage	9.880
	SRR8316906	Gold flowering stage	56.073
	SRR8316907	Gold flowering stage	39.123
	SRR8316908	Gold flowering stage	62.321
SRP132670	SRR6706286	Control	14.990
	SRR6706287	Light intensity 50%	14.235
	SRR6706288	Light intensity 20%	15.004
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.618
	CNS0095593	Slightly white alabastrum(diploid) 2	10.830
	CNS0095594	Slightly white alabastrum(diploid) 3	9.449
	CNS0095595	Whole white alabastrum(diploid) 2	10.929
	CNS0095596	Whole white alabastrum(diploid) 3	8.105
	CNS0095597	Whole white alabastrum(diploid) 4	8.819
	CNS0095598	Silvery flower (diploied) 1	17.806
	CNS0095599	Silvery flower (diploied) 2	14.806
	CNS0095600	Silvery flower (diploied) 3	33.813
	CNS0095601	Golden flower (diploid) 1	17.757
	CNS0095602	Golden flower (diploid) 2	39.363
	CNS0095603	Golden flower (diploid) 3	37.062
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.902
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.663
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.437
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.521
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.364
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.062
	CNS0095610	Silvery flower (diploied) 1	45.532
	CNS0095611	Silvery flower (diploied) 2	43.287
	CNS0095612	Silvery flower (diploied) 3	36.914
	CNS0095613	Golden flower (tetraploid) 1	44.759
	CNS0095614	Golden flower (tetraploid) 2	43.812
	CNS0095615	Golden flower (tetraploid) 3	58.138
CRA001975	CRR073297	Stem 1	19.633
	CRR073298	Stem 2	17.854
	CRR073299	Stem 3	14.336
	CRR073300	Leaf 1	20.306
	CRR073301	Leaf 2	19.895
	CRR073302	Leaf 3	14.735
	CRR073303	Juvenile bud 1	16.010
	CRR073304	Juvenile bud 2	11.737
	CRR073305	Juvenile bud 3	18.080
	CRR073306	Third green 1	8.322
	CRR073307	Third green 2	7.941
	CRR073308	Third green 3	8.158
	CRR073309	Second white 1	19.361
	CRR073310	Second white 2	16.671
	CRR073311	Second white 3	16.474
	CRR073312	Silver flowering 1	21.931
	CRR073313	Silver flowering 2	25.547
	CRR073314	Silver flowering 3	29.757
	CRR073315	Gold flowering 1	13.640
	CRR073316	Gold flowering 2	22.189
	CRR073317	Gold flowering 3	12.740
	CRR073318	Tawny withering 1	14.940
	CRR073319	Tawny withering 2	15.417
	CRR073320	Tawny withering 3	11.926