Gene detail

Detail information of GWHGAAZE004627

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009794579.1	3.1813E-131	PREDICTED: rac-like GTP-binding protein RAC13 [Nicotiana sylvestris]
Swissprot	tr\|Q6Z7L8\|RAC7_ORYSJ	2E-120	Rac-like GTP-binding protein 7 (Precursor)
trEMBL	tr\|K4B8W6\|K4B8W6_SOLLC	4E-131	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc02g077400.2.1}
TAIR10	AT5G45970.1	9E-92	RAC-like 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	119909915	119911247	+
GWHAAZE00000001	mRNA	119909915	119911247	+
GWHAAZE00000001	exon	119909915	119910042	+
GWHAAZE00000001	exon	119910126	119910217	+
GWHAAZE00000001	exon	119910275	119910413	+
GWHAAZE00000001	exon	119910521	119910584	+
GWHAAZE00000001	exon	119910706	119910770	+
GWHAAZE00000001	exon	119910862	119910927	+
GWHAAZE00000001	exon	119911091	119911247	+
GWHAAZE00000001	five_prime_UTR	119909915	119909943	+
GWHAAZE00000001	CDS	119909944	119910042	+
GWHAAZE00000001	CDS	119910126	119910217	+
GWHAAZE00000001	CDS	119910275	119910413	+
GWHAAZE00000001	CDS	119910521	119910584	+
GWHAAZE00000001	CDS	119910706	119910770	+
GWHAAZE00000001	CDS	119910862	119910927	+
GWHAAZE00000001	CDS	119911091	119911189	+
GWHAAZE00000001	three_prime_UTR	119911190	119911247	+

Transcript Sequence
>GWHTAAZE004633 CAAACAAAACAAAAACAAATTAAGATAGAATGAGTACTGCAAGGTTTATCAAATGCGTGACAGTAGGTGATGGCGCGGTGGGAAAGACTTGCATGCTCATTTCCTATACCAGCAATACCTTTCCAACGGATTATGTTCCAACGGTGTTCGACAACTTTAGTGCTAATGTGGTTGTTGATGGTAGTACGGTGAACCTTGGCCTATGGGATACTGCAGGCAATTTATATTGCTTTGTGAAATTTAATACAGGACAAGAAGATTACAACAGGCTAAGGCCTCTTAGTTACAGAGGAGCTGATATTTTTCTTTTGGCTTTCTCTCTCATCAGCAAGGCCAGCTATGAGAATATCTACAAAAAGTGGATCCCTGAGCTGAGACACTATGCCCCAACCATACCAATTGTGCTAGTGGGAACCAAACTTGATTTGAGAGAAGACAGGCAGTACTTGAGTGATCATCCTGGGTCTACACCAATTACAGCATCCCAGGGAGAAGAACTGAAGAAGATGATTGGCGCGGTTGCTTACATAGAGTGCAGTTCCAAAACTCAGCAGAATGTGAAGGCTGTGTTTGATACTGCAATAAAGGTTGCATTAAGGCCACCAAGACTGAAGAAAAAGCCACAAAAGAAAAGGCTATGCACATTCCTTTGAACCCAGTTAATAATAATATTCTTGTTTACTATATAAACTCTAAAGTCCCTCCTAAAAT

Network for GWHGAAZE004627

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00071.23	Ras	8	188	1.20E-46

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04392	RAC1	Ras signaling pathway	map04014
		Rap1 signaling pathway	map04015
		MAPK signaling pathway	map04010
		MAPK signaling pathway - fly	map04013
		Wnt signaling pathway	map04310
		VEGF signaling pathway	map04370
		Sphingolipid signaling pathway	map04071
		cAMP signaling pathway	map04024
		PI3K-Akt signaling pathway	map04151
		Phagosome	map04145
		Focal adhesion	map04510
		Adherens junction	map04520
		Tight junction	map04530
		Regulation of actin cytoskeleton	map04810
		Toll-like receptor signaling pathway	map04620
		Natural killer cell mediated cytotoxicity	map04650
		B cell receptor signaling pathway	map04662
		Fc epsilon RI signaling pathway	map04664
		Fc gamma R-mediated phagocytosis	map04666
		Leukocyte transendothelial migration	map04670
		Chemokine signaling pathway	map04062
		Pancreatic secretion	map04972
		Neurotrophin signaling pathway	map04722
		Axon guidance	map04360
		Axon regeneration	map04361
		Osteoclast differentiation	map04380

Gene Ontology

GO term	Ontology	Name
GO:0007264	biological_process	small GTPase mediated signal transduction
GO:0005525	molecular_function	GTP binding
GO:0003924	molecular_function	GTPase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	62.900
	SRR3591706	second leaf	2.656
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.749
	SRR3591709	Stem	46.288
	SRR3591710	White floral bud	1.193
	SRR3591711	White flower	7.295
	SRR3591712	Green floral bud	5.570
	SRR3591713	Yellow flower	0.959
SRP173429	SRR8316895	Juvenile bud stage	18.155
	SRR8316896	Juvenile bud stage	13.057
	SRR8316897	Juvenile bud stage	4.256
	SRR8316894	Third green stage	1.706
	SRR8316900	Third green stage	2.828
	SRR8316901	Third green stage	3.199
	SRR8316898	Complete white stage	0.353
	SRR8316899	Complete white stage	2.438
	SRR8316903	Complete white stage	0.756
	SRR8316902	Silver flowering stage	0.779
	SRR8316904	Silver flowering stage	2.947
	SRR8316905	Silver flowering stage	0.703
	SRR8316906	Gold flowering stage	0.982
	SRR8316907	Gold flowering stage	8.787
	SRR8316908	Gold flowering stage	1.229
SRP132670	SRR6706286	Control	1.580
	SRR6706287	Light intensity 50%	1.993
	SRR6706288	Light intensity 20%	1.385
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.252
	CNS0095593	Slightly white alabastrum(diploid) 2	3.303
	CNS0095594	Slightly white alabastrum(diploid) 3	13.915
	CNS0095595	Whole white alabastrum(diploid) 2	1.079
	CNS0095596	Whole white alabastrum(diploid) 3	2.002
	CNS0095597	Whole white alabastrum(diploid) 4	2.294
	CNS0095598	Silvery flower (diploied) 1	0.828
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	1.158
	CNS0095601	Golden flower (diploid) 1	0.507
	CNS0095602	Golden flower (diploid) 2	1.245
	CNS0095603	Golden flower (diploid) 3	0.319
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.369
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.562
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.203
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.114
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.305
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.206
	CNS0095610	Silvery flower (diploied) 1	1.685
	CNS0095611	Silvery flower (diploied) 2	0.158
	CNS0095612	Silvery flower (diploied) 3	0.095
	CNS0095613	Golden flower (tetraploid) 1	0.588
	CNS0095614	Golden flower (tetraploid) 2	0.071
	CNS0095615	Golden flower (tetraploid) 3	0.327
CRA001975	CRR073297	Stem 1	43.759
	CRR073298	Stem 2	23.150
	CRR073299	Stem 3	34.455
	CRR073300	Leaf 1	2.105
	CRR073301	Leaf 2	2.222
	CRR073302	Leaf 3	1.733
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.460
	CRR073305	Juvenile bud 3	0.644
	CRR073306	Third green 1	3.300
	CRR073307	Third green 2	4.423
	CRR073308	Third green 3	1.963
	CRR073309	Second white 1	2.974
	CRR073310	Second white 2	0.745
	CRR073311	Second white 3	0.352
	CRR073312	Silver flowering 1	0.028
	CRR073313	Silver flowering 2	0.429
	CRR073314	Silver flowering 3	0.142
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.036
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	42.041
	CRR073319	Tawny withering 2	21.008
	CRR073320	Tawny withering 3	70.292