Gene detail

Detail information of GWHGAAZE004640

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010655460.1	1.3453E-140	PREDICTED: serine/threonine-protein kinase-like protein ACR4 [Vitis vinifera]
Swissprot	tr\|Q9LX29\|ACR4L_ARATH	8E-40	Serine/threonine-protein kinase-like protein ACR4 (Precursor)
trEMBL	tr\|F6HM40\|F6HM40_VITVI	5E-141	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55628.1}
TAIR10	AT5G46080.1	1E-62	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	120101717	120102720	-
GWHAAZE00000001	mRNA	120101717	120102720	-
GWHAAZE00000001	exon	120101717	120102060	-
GWHAAZE00000001	exon	120102147	120102720	-
GWHAAZE00000001	CDS	120102147	120102720	-
GWHAAZE00000001	CDS	120101717	120102060	-

Transcript Sequence
>GWHTAAZE004646 ATGAGCTATGGCGAAAGAATTGCTTACGACATCGTTTTATCTCTCCTCTCCACCTCTCTCGTTATTCTCGCTATCCTTCTCTTCATCTTTTACAAGAAAAAGAAGCCTTTAAAACCCAAAGAAACTCTTAATCCTATCACGTCTTGTGCTTGCCCGTATTCGTTAATGGATATTGATGCAGCCACCGACGGCTTTAACCACCGGAGAATTATTGGAAGTGGCCGGCTTGGGACCGTTTATACAGCTGTGAGGTGCACGGGAGAGCTAGTCACAGTTAAGCGGATCCATCCTCGTCTTGTATTGTGTAATGCCGGTTTTGGGTTCTCATCAATTGTTAAAAGCCTCTCCTTGGCTCACCATCCCCATGTAGTGCCCGTATTAGGGTTTTCGGAGGGTCCCGGCGAGAGAATTATAGTGATGGAATTTGTGGGCATGATGAGCTTGGACTTGTATTTGCATCAAAACTCCGATGGTGTACCCTTGTTGGATTGGGACCGGCGGTTGGGAATCGCAGCTGGGGCGGCTCGAGGGGTTGAGTACTTGCATGAGGTGATGGTACCACCTATAGTGCATGAGAGGAACGGGCTTTCAGGGTATGTTGATGATGAGTATTGGGTCAAAGGGGGATCAAAGGAGAATGATGTTTATGGGTTAGGGGTGGTTTTGTTAGAGCTTTTGAGTGGTAGGAGAAATGAAGAAGGGTTAATTGTAAGGTGGGCTTTGCCTTTGATTAAAGAAATGAAGTTGAGGGAACTTTTGGATCCAAGACTTGAAATGCCAAATGATATGAAGTCAATTGTTAGATTGGCTAAAGTTGCTTTAGCTTGTGTTGGGAATTCGAGGAAAAATAGGCCTTCTATTGGTCAGGTGGTTTCTATTTTGAACAATTTAGAAGATATGATGGAGTTATGCATTTAA

Network for GWHGAAZE004640

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	68	184	8.60E-10

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-Xb-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.593
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.062
	SRR3591708	Shoot apex	0.595
	SRR3591709	Stem	2.505
	SRR3591710	White floral bud	3.625
	SRR3591711	White flower	2.642
	SRR3591712	Green floral bud	1.588
	SRR3591713	Yellow flower	15.237
SRP173429	SRR8316895	Juvenile bud stage	0.131
	SRR8316896	Juvenile bud stage	0.254
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.049
	SRR8316900	Third green stage	0.407
	SRR8316901	Third green stage	0.298
	SRR8316898	Complete white stage	0.979
	SRR8316899	Complete white stage	0.280
	SRR8316903	Complete white stage	0.692
	SRR8316902	Silver flowering stage	0.698
	SRR8316904	Silver flowering stage	1.628
	SRR8316905	Silver flowering stage	0.553
	SRR8316906	Gold flowering stage	6.102
	SRR8316907	Gold flowering stage	4.420
	SRR8316908	Gold flowering stage	4.469
SRP132670	SRR6706286	Control	1.307
	SRR6706287	Light intensity 50%	0.719
	SRR6706288	Light intensity 20%	0.718
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.444
	CNS0095593	Slightly white alabastrum(diploid) 2	0.221
	CNS0095594	Slightly white alabastrum(diploid) 3	0.525
	CNS0095595	Whole white alabastrum(diploid) 2	0.328
	CNS0095596	Whole white alabastrum(diploid) 3	0.662
	CNS0095597	Whole white alabastrum(diploid) 4	0.169
	CNS0095598	Silvery flower (diploied) 1	0.473
	CNS0095599	Silvery flower (diploied) 2	0.856
	CNS0095600	Silvery flower (diploied) 3	2.373
	CNS0095601	Golden flower (diploid) 1	0.452
	CNS0095602	Golden flower (diploid) 2	4.781
	CNS0095603	Golden flower (diploid) 3	4.912
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.374
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.542
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.771
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.343
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.535
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.913
	CNS0095610	Silvery flower (diploied) 1	2.034
	CNS0095611	Silvery flower (diploied) 2	0.413
	CNS0095612	Silvery flower (diploied) 3	2.045
	CNS0095613	Golden flower (tetraploid) 1	3.405
	CNS0095614	Golden flower (tetraploid) 2	5.924
	CNS0095615	Golden flower (tetraploid) 3	1.210
CRA001975	CRR073297	Stem 1	0.737
	CRR073298	Stem 2	0.114
	CRR073299	Stem 3	0.390
	CRR073300	Leaf 1	0.052
	CRR073301	Leaf 2	0.498
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.607
	CRR073304	Juvenile bud 2	0.046
	CRR073305	Juvenile bud 3	0.240
	CRR073306	Third green 1	2.392
	CRR073307	Third green 2	0.877
	CRR073308	Third green 3	1.331
	CRR073309	Second white 1	3.925
	CRR073310	Second white 2	4.511
	CRR073311	Second white 3	2.918
	CRR073312	Silver flowering 1	5.426
	CRR073313	Silver flowering 2	5.183
	CRR073314	Silver flowering 3	6.240
	CRR073315	Gold flowering 1	0.168
	CRR073316	Gold flowering 2	0.167
	CRR073317	Gold flowering 3	0.166
	CRR073318	Tawny withering 1	5.453
	CRR073319	Tawny withering 2	5.935
	CRR073320	Tawny withering 3	0.550