Gene detail

Detail information of GWHGAAZE004665

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002267490.2	0	PREDICTED: probable ubiquitin-conjugating enzyme E2 24 [Vitis vinifera]
Swissprot	tr\|Q8VY10\|UBC24_ARATH	0	Probable ubiquitin-conjugating enzyme E2 24
trEMBL	tr\|D7T0D7\|D7T0D7_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI23966.3}
TAIR10	AT2G33770.1	2E-162	phosphate 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	120508213	120512957	+
GWHAAZE00000001	mRNA	120508213	120512957	+
GWHAAZE00000001	exon	120508213	120509544	+
GWHAAZE00000001	exon	120509932	120510069	+
GWHAAZE00000001	exon	120510349	120510780	+
GWHAAZE00000001	exon	120510870	120510933	+
GWHAAZE00000001	exon	120511532	120511671	+
GWHAAZE00000001	exon	120512697	120512957	+
GWHAAZE00000001	CDS	120508213	120509544	+
GWHAAZE00000001	CDS	120509932	120510069	+
GWHAAZE00000001	CDS	120510349	120510780	+
GWHAAZE00000001	CDS	120510870	120510933	+
GWHAAZE00000001	CDS	120511532	120511671	+
GWHAAZE00000001	CDS	120512697	120512957	+

Transcript Sequence
>GWHTAAZE004671 ATGGATCTGTTTCTTAGTGACTTCGATAGTTTCAGTGAGAGCAGTAGCTATGACGATCAAGATGACCCTGAATTTTTCGATGGTGGAAAGGCCATTTCTATTTTGTCGAGTCTCGAGGAAAGTATCGGAAAAATTGACGATTTCCTTTCATTTGAGAGGGGATTTAGCCATGGGGACATCGTATGCTCTGTGGTAGATCCATGTGGACAAACGGGCCGAGTGATCAATGTTGATATCATTGTGGATTTGGAAAATGTTCTTGGAAACAAAATAAAAGACGTCGATGCCAAAAGACTTCGAAAGATACGTTCCATTTCAATAGGGGATTATGTAGTTAATGGTCCTTGGCTTGGAAAAATAGATAAAATAGTCGATTGTGTCACCGTCCTGTTTGATGACGGTACTAAGTGTGAATTTACCACAATGAGCCCAGAGAAGCTTGTACCCATTTCTTCAGATTTTCTTGAAGATTCACAATACCCTTATTATCCAGGACAGAGAGTGAAGGTTGAGCCCTCATCTTTTTCCCAATCGGCGAGATGGTTATGTGGTAGACAGAAGGAAACATGTGATGAAGGAACTGTCTGTGCTGTGGATGCAGGATTGGTCCACGTTGTTTGGCTTGGCTGTGCGCTGATTGGTTGTGAGAGGATACCTACCCCTTCACATTTGCAGGACTCAAAAAACTTGACTTTGTTGTCATGTTTCTCTCATACAAACTGGCAGCTTGGTGATTGGTGCATATTTCCAATTCTTGAAGAAAATAGTCTTATGGAGCACATTTTCTTTACTGCATCAGAAACAGAATTTCAGAGGAGCTGTGAGCCTAGTTTTCAAGAAATCTTTGTTATTGTGAAGACAAAGACAAAAGTCAATGTTCTTTGGCAAGATGGCAGCCAATCGGCAGGCTTAGATTCTCATATGCTGTTTCCAGTAAATATTACCACTATTCATGATTTTTGGCCTGGACAGTTCGTGGTGGAAAAAGGAACCTGTGATGATCTACAAGTTCCTGGCATTAGCCAAAAATGGGGTGTGGTGAGATGTGTGGATGCAAAGGAACGAACTGTGAGAGTAAAATGGAGAAAATTTGTGCAAAATGAAAGTGATTTGGAGGGAGAGATGAAGGAAGAAACTGTGAGTGCTTATGAACTGGTTGAGCACCCAGACTACTCTTATTTTGTTGGTGATATGGTGTTCAAATTTGAAAGGGGAAACTTTATTGTTCAGAATGAATATACTAGCAACAGTTTCTTGTCTCGCATTGGCACTGTGGTGGGCTTTAAAGATGGAGACATCAAAGTGAATTGGACTAGTGGTCTTACAACAAAGGTTGCACCTCATGAGATCTTTCGGGTAGATAAGTACGAAGATTTGTTTGCAGCTCCTGTGCACCATGATGAAAATGCTGAGGAATTGGATGAAGAGAGGACTCAGCATGACAAGCAACCTCTGGGGAAGGAAGGAAAGAGCTTCTTCGATGTTAATGGTAATGGCAAAGATTGCCAAAAGACCAAATGGGATTCTAGTTCCTTTTTCATTCCTCAAGCTGCCTTTGGGTTTTTCAGTAGCATCACCTCAAGTCTCTTTGGTTCTGTGTGTTCCACATCTAACCACATATCAGAAGATGGACAAAGATCTGGCATTCTTCATAAGGAGGAAGTGCCGGAACTTTGTAATTTGTGTACCGTGGGCCCACCATTGGTAGTCGCCGATTTGCAGACACTTTTGGGGACACACCTGGAGCAGAAAGTGAAGGAAACGAAAACCCTGGATAGTGACAAGCTTCCATTTTTAGCAGGCAGTAACAAACCAGAACTTTTTAGGCAGTTTGATATGGTCAGTGGTTGCTCAGACCATCATTTTGCTGAGGGTGCCGGCAAGAACTTAACCTCATCTCAAGTAAAAAAAGGTTGGCTGAAGAAGGTTCAGCAAGAATGGAGCATTCTGGAAAAAGATCTTCCTGAAACAATCTATGTTCGCGTCTATGAGGAAAGGATGGATTTGTTGCGTGCAGCAATTATAGGGGCACCGGGGACTCCATACCATGATGGCCTTTTTATCTTTGACATTTCTCTTCCTCCCGAGTATCCTCGCGAACCACCTCACTATGAGGCACTTGTGGAGGAGCACTTCAGCAGGCGCTGCCAATATTTTTTATCGGCATGTAAAGCGTATATGGAAGGGGTACCAGTAGGGTGTGCTTTTGGAGAGAGAAAAGCTGATAATGAGGTGGTAGTAGAAATAGAAAATAAAAGGGGAAGCTCTTCTACTGGTTTCAAGATCATGCTTGCCAAGCTCTTTCCTAAGCTTGTGGAAGCCTTTTCTGATAAAGGTATCGATTGCAGCCAATTTGTTGACCCTTAG

Network for GWHGAAZE004665

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00179.27	UQ_con	643	705	1.10E-09

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	UBC

KEGG pathway

KO	Enzyme	pathway	mapID
K10581	UBE2O	Ubiquitin mediated proteolysis	map04120

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.056
	SRR3591706	second leaf	13.660
	SRR3591707	mature leaf	19.028
	SRR3591708	Shoot apex	14.458
	SRR3591709	Stem	52.426
	SRR3591710	White floral bud	23.279
	SRR3591711	White flower	27.229
	SRR3591712	Green floral bud	24.689
	SRR3591713	Yellow flower	30.491
SRP173429	SRR8316895	Juvenile bud stage	12.671
	SRR8316896	Juvenile bud stage	16.871
	SRR8316897	Juvenile bud stage	8.314
	SRR8316894	Third green stage	12.536
	SRR8316900	Third green stage	27.437
	SRR8316901	Third green stage	27.369
	SRR8316898	Complete white stage	10.494
	SRR8316899	Complete white stage	35.409
	SRR8316903	Complete white stage	25.876
	SRR8316902	Silver flowering stage	28.482
	SRR8316904	Silver flowering stage	45.977
	SRR8316905	Silver flowering stage	24.482
	SRR8316906	Gold flowering stage	47.384
	SRR8316907	Gold flowering stage	58.779
	SRR8316908	Gold flowering stage	49.634
SRP132670	SRR6706286	Control	25.100
	SRR6706287	Light intensity 50%	26.807
	SRR6706288	Light intensity 20%	26.367
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.811
	CNS0095593	Slightly white alabastrum(diploid) 2	17.616
	CNS0095594	Slightly white alabastrum(diploid) 3	19.174
	CNS0095595	Whole white alabastrum(diploid) 2	17.139
	CNS0095596	Whole white alabastrum(diploid) 3	18.901
	CNS0095597	Whole white alabastrum(diploid) 4	15.673
	CNS0095598	Silvery flower (diploied) 1	26.577
	CNS0095599	Silvery flower (diploied) 2	22.987
	CNS0095600	Silvery flower (diploied) 3	57.709
	CNS0095601	Golden flower (diploid) 1	19.338
	CNS0095602	Golden flower (diploid) 2	45.626
	CNS0095603	Golden flower (diploid) 3	45.101
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.556
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.800
	CNS0095606	Slightly white alabastrum(tetraploid) 3	34.098
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.671
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.103
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.408
	CNS0095610	Silvery flower (diploied) 1	25.838
	CNS0095611	Silvery flower (diploied) 2	29.014
	CNS0095612	Silvery flower (diploied) 3	23.969
	CNS0095613	Golden flower (tetraploid) 1	18.251
	CNS0095614	Golden flower (tetraploid) 2	29.947
	CNS0095615	Golden flower (tetraploid) 3	29.952
CRA001975	CRR073297	Stem 1	19.366
	CRR073298	Stem 2	17.034
	CRR073299	Stem 3	15.105
	CRR073300	Leaf 1	27.209
	CRR073301	Leaf 2	19.130
	CRR073302	Leaf 3	19.658
	CRR073303	Juvenile bud 1	23.011
	CRR073304	Juvenile bud 2	22.748
	CRR073305	Juvenile bud 3	24.884
	CRR073306	Third green 1	14.422
	CRR073307	Third green 2	9.319
	CRR073308	Third green 3	13.464
	CRR073309	Second white 1	13.383
	CRR073310	Second white 2	14.650
	CRR073311	Second white 3	18.016
	CRR073312	Silver flowering 1	12.032
	CRR073313	Silver flowering 2	7.771
	CRR073314	Silver flowering 3	6.175
	CRR073315	Gold flowering 1	9.006
	CRR073316	Gold flowering 2	11.119
	CRR073317	Gold flowering 3	7.674
	CRR073318	Tawny withering 1	29.607
	CRR073319	Tawny withering 2	26.337
	CRR073320	Tawny withering 3	30.095