Gene detail

Detail information of GWHGAAZE004736

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO99643.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9M0Y6\|DPNPM_ARATH	1E-173	Putative PAP-specific phosphatase, mitochondrial (Precursor)
trEMBL	tr\|A0A068TWC3\|A0A068TWC3_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_4 {ECO:0000313\|EMBL:CDO99643.1}
TAIR10	AT4G05090.1	2E-136	Inositol monophosphatase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	121407568	121412940	+
GWHAAZE00000001	mRNA	121407568	121412940	+
GWHAAZE00000001	exon	121407568	121407668	+
GWHAAZE00000001	exon	121407777	121407873	+
GWHAAZE00000001	exon	121407997	121408099	+
GWHAAZE00000001	exon	121408809	121409020	+
GWHAAZE00000001	exon	121409176	121409235	+
GWHAAZE00000001	exon	121409872	121410269	+
GWHAAZE00000001	exon	121411596	121411674	+
GWHAAZE00000001	exon	121412193	121412243	+
GWHAAZE00000001	exon	121412642	121412940	+
GWHAAZE00000001	CDS	121407568	121407668	+
GWHAAZE00000001	CDS	121407777	121407873	+
GWHAAZE00000001	CDS	121407997	121408099	+
GWHAAZE00000001	CDS	121408809	121409020	+
GWHAAZE00000001	CDS	121409176	121409235	+
GWHAAZE00000001	CDS	121409872	121410269	+
GWHAAZE00000001	CDS	121411596	121411674	+
GWHAAZE00000001	CDS	121412193	121412243	+
GWHAAZE00000001	CDS	121412642	121412791	+
GWHAAZE00000001	three_prime_UTR	121412792	121412940	+

Transcript Sequence
>GWHTAAZE004742 ATGGACCTTCAACATCTACACTACTTCTACTCTCGTTTACTTCCTTCAATTCGCCGTCGTCCTTTCAACTCCTCTTCCCTTTCTCCACGCTTCATTGTTAGGTCGAGCCTTCCGTTTCCGGAGCATAAAGCAAAGTACCACAGAGAGCTCCAAGCTGCAGTCGATGTCGTCCAGCGAGCTTGTCTTCTCTGTCTTGACGTAAAGAAGTCTTTGTTCTCTAGTGATGCCCACATTCTCGAGAAGAATGATCAGACTCCAGTCACTGTTGCTGATTTTGGCGTTCAGGCTTTAATCAGCTTGGGGCTAGGCGAGCTGTTTCCTTCTATTCCATTGGTGGCTGAAGAGGATTCGGCATTCCTACGTTCAAATGATCTGGTAAATTATGTAGTAAGCGTGGTAAGTGATAAAGCAGCTTCTAGAGATTTACCATTGACCGAGGATGATGTATTGGAAGCAATTGACAGAGGGGGAAAGGATGCATTTGTTTTTGGTCCTAAGCCTGCCACTTATTGGATACTGGATCCAATTGATGGAACACGAGGGTTTCTGAAAGGTAGTGAGGCCTTATATGTGCAGAGCCCAAAATTACAGGTAGGTTTGGCTCTTGTGGTTGAAGGAGAGATTGTATTAGGAGTTATGGGCTGCCCTAACTGGCAGGATGAGAATTACACGAAATCCAGTGCTACATATGAAAGCAATGTATCAAGATTAGGAACCATTATGGTTGCTCATGTTGGCTGTGGAACATGGAGAAAAAAATTGTCATATATGCTAAACAGCACACCTAACATACCTGATAATTGGACCAGATGCTATGTTGATGAGTGTTGCATAGTTTACGAGGCACGTTTTTGTATCCCAGATAGTCAAACATGGGAATCATTACCACTATCGCAATTATTTGCTGCGACAACTGATGTGGAAAGCATTACAGATAAAGTAATTCTTCTTCTGCCTGCTTGTTGTGGAAGTTTGTGCAAATATTTGATGGTGGCTTCTGGTAGGGCAACAGTTTTTATTCAACGTACAAGGTCTCAAAAGGTTATCAAGGTTTGGGATCATGCTGTCGGGGTGATATGCGTGCATGAAGCTGGGGGAAAGGTGACTGATTGGAGAGGGAGTGAAATTGATATGGCAGCAGATCATGTTGAGAGGAGGGTCTTGTATCCTTCAGGCGGTGTTCTAGTGACAAATCGCAGCTTGCACAGCGAGATAATTAGTATGATCTCCTCTACTTCATCAGTTATTTGATGATGTGTGTGTTTTAATCATGTTACTATAATTCATACCACGTACAATGACCAATCGTCGTGATTAGTTTTTAGACACACAATTGTACAATTTTTGAGGGGCTGGGTTCGGTTCAATTGTATTCAATTTCGAAACCTTTGTTGAATAAC

Network for GWHGAAZE004736

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00459.26	Inositol_P	83	409	1.50E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01082	cysQ, MET22, BPNT1	Metabolic pathways	map01100
		Microbial metabolism in diverse environments	map01120
		Sulfur metabolism	map00920

Gene Ontology

GO term	Ontology	Name
GO:0046854	biological_process	phosphatidylinositol phosphorylation

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.037
	SRR3591706	second leaf	22.971
	SRR3591707	mature leaf	13.887
	SRR3591708	Shoot apex	14.350
	SRR3591709	Stem	4.552
	SRR3591710	White floral bud	2.193
	SRR3591711	White flower	1.908
	SRR3591712	Green floral bud	7.874
	SRR3591713	Yellow flower	0.446
SRP173429	SRR8316895	Juvenile bud stage	6.519
	SRR8316896	Juvenile bud stage	8.842
	SRR8316897	Juvenile bud stage	4.407
	SRR8316894	Third green stage	4.169
	SRR8316900	Third green stage	14.671
	SRR8316901	Third green stage	11.997
	SRR8316898	Complete white stage	1.463
	SRR8316899	Complete white stage	9.961
	SRR8316903	Complete white stage	2.254
	SRR8316902	Silver flowering stage	0.126
	SRR8316904	Silver flowering stage	0.567
	SRR8316905	Silver flowering stage	0.121
	SRR8316906	Gold flowering stage	0.695
	SRR8316907	Gold flowering stage	0.552
	SRR8316908	Gold flowering stage	0.561
SRP132670	SRR6706286	Control	9.085
	SRR6706287	Light intensity 50%	9.564
	SRR6706288	Light intensity 20%	10.918
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.263
	CNS0095593	Slightly white alabastrum(diploid) 2	7.291
	CNS0095594	Slightly white alabastrum(diploid) 3	5.718
	CNS0095595	Whole white alabastrum(diploid) 2	6.512
	CNS0095596	Whole white alabastrum(diploid) 3	7.878
	CNS0095597	Whole white alabastrum(diploid) 4	5.875
	CNS0095598	Silvery flower (diploied) 1	5.591
	CNS0095599	Silvery flower (diploied) 2	4.778
	CNS0095600	Silvery flower (diploied) 3	2.135
	CNS0095601	Golden flower (diploid) 1	5.658
	CNS0095602	Golden flower (diploid) 2	2.496
	CNS0095603	Golden flower (diploid) 3	1.766
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.845
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.229
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.251
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.109
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.513
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.350
	CNS0095610	Silvery flower (diploied) 1	2.628
	CNS0095611	Silvery flower (diploied) 2	1.906
	CNS0095612	Silvery flower (diploied) 3	1.022
	CNS0095613	Golden flower (tetraploid) 1	0.405
	CNS0095614	Golden flower (tetraploid) 2	1.127
	CNS0095615	Golden flower (tetraploid) 3	0.185
CRA001975	CRR073297	Stem 1	9.897
	CRR073298	Stem 2	6.822
	CRR073299	Stem 3	6.516
	CRR073300	Leaf 1	9.828
	CRR073301	Leaf 2	6.748
	CRR073302	Leaf 3	6.069
	CRR073303	Juvenile bud 1	7.024
	CRR073304	Juvenile bud 2	4.012
	CRR073305	Juvenile bud 3	6.993
	CRR073306	Third green 1	0.375
	CRR073307	Third green 2	0.002
	CRR073308	Third green 3	0.177
	CRR073309	Second white 1	0.205
	CRR073310	Second white 2	0.277
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.034
	CRR073313	Silver flowering 2	0.565
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	7.235
	CRR073316	Gold flowering 2	10.310
	CRR073317	Gold flowering 3	5.229
	CRR073318	Tawny withering 1	2.585
	CRR073319	Tawny withering 2	3.202
	CRR073320	Tawny withering 3	2.723