Gene detail

Detail information of GWHGAAZE004953

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002518600.1	1.8812E-178	S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
Swissprot	tr\|O81832\|Y4729_ARATH	7E-100	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (Precursor)
trEMBL	tr\|B9RXY1\|B9RXY1_RICCO	7E-179	Serine/threonine-protein kinase {ECO:0000256\|PIRNR:PIRNR000641}
TAIR10	AT4G27290.1	5E-84	S-locus lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	125111637	125124650	-
GWHAAZE00000001	mRNA	125111637	125124650	-
GWHAAZE00000001	exon	125124375	125124650	-
GWHAAZE00000001	exon	125116584	125117216	-
GWHAAZE00000001	exon	125115663	125116296	-
GWHAAZE00000001	exon	125114847	125114934	-
GWHAAZE00000001	exon	125112290	125112559	-
GWHAAZE00000001	exon	125111637	125111772	-
GWHAAZE00000001	CDS	125124375	125124650	-
GWHAAZE00000001	CDS	125116584	125117216	-
GWHAAZE00000001	CDS	125115663	125116296	-
GWHAAZE00000001	CDS	125114847	125114934	-
GWHAAZE00000001	CDS	125112290	125112559	-
GWHAAZE00000001	CDS	125111637	125111772	-

Transcript Sequence
>GWHTAAZE004959 ATGTACCCATCCCCTAATTTTATGTTTGCCACATTGCGATGGTGTTCATGTGTAGATCAAGCCAGAAAGAGACTACTTACTTGGGAGAAGCATCTCAATATCATTGCGGAGGTGGCAAAGGGACTGGTCTACCTTCATGACGACTCAAGGCTTAGAATAATCCACCGTGATCTGAAGGCGAGCAATATTTTGCTAGACAGTGAACTGAACCCCAAAATTTCTGACTTTGGTAGAGCAAGAATTTTTGCAGAGGGGGCTGCAGAAACAACAGGGAGATTAACCATTAGAGCATCAACCATCATGCTCCTTCCGCTCGTCTTCTTCATTCTCACTTGTCTCTCCTCCTTCACCTCACCCTCCACACTATCACCACCCCAAACTCTAACAGATACCGGCCAAACTTTAATTTCCACAGCCCAAACCTTCGAACTAGGTTTCTTTACCCCATGGAATTCACCCAACCGTTACATCGGAATTTGGTTCAAGAACGTCGCACAACTAACACCCGTTTGGGTCGCCAACCGGAACAACCCGATAAACGACTCTTCCGGTGTACTCACCATCACCCAGAATGGAAACATAGTCATCACAAAAAACAGCACCAACACCATTTTGTGGTCCTCAAATTCGTCTTCGACAAACCTGGCAAGTACTAATCCGGTGTTAGAATTATTGGACAGTGGTAACCTTGTCGTTAGGGTTGATGATTCGACAAGTTATTTGTGGCAAAGCTTTGATCATCCGTGTGACACGTTAATACCAGGCATGAAGCTCGGATGGAACCTTACAGCCAATCAAGAATGGTTTTTAAATTCCTGGAGGGATTTACAAGATCCAGCTACGGGCGAATACACGTACAGAATGGACCCACGCGGGCTTCCTGAGATAGTTCTACGTTTCGGACAACAGAAGTGGGCCGTGGGATGGAGTTCGATTTGGGGCGAACCAGTGCTGCGGGAAAACTCGGTGTTCAAACCCATCATTGTATTCGACTCTACCCAAGTTTACTATGCATTTGAAAACACTGATAATTCAACAATTTCAAGGTTTGTGGTGAACCAATCCGGAGAAGTAAAGCATGTGTCATGGAATGAGAGGCGAAACGAATGGGTGGACATAGCAACAATTCAACAAGACCAGTGCGACACTTACAATTTCTGCGGGCCATATGGGATTTGTAACATAAATAGTAACCCAATTTGTAAGTGCCCAAGTGGGTTTAGGCCAAGTTTGGAGCAAGATTGGGAGAGATTTGATTGGACAGGTGGGTGTGTTGCTAAGGTAGCATTGAATTGTAGCGTACCACAGGGGTTTAGGAGGTTTAGGAGGATGAAATTGCCAGACAGTTCGTTGTTTTTGGTGAACAAAACGGCGACGAATCAGGTGGAGTGTAGGGATGCTTGTTTGAGGAATTGTTCGTGTATGGCTTATGCTAAAACGGAGGCTAGTGGGTGTGTGGCTTGGTTTGGGGATTTGCTTGATATTAAAGAGTACAATGAAGGCGGACAAGATTTGTACATTCGGATGGATGCCTCTCAATTAGGATCCAACAACAATGCCAAACGAAAGGCCATAATTGCATCGGTATCAGTAATTTCAGGGATTCTACTGCTTGGATTATTAATCAGTTGTCAAGTTTCTAACTTCATGCTGACTGGCCCAGATCAAACAAGAGGTACATCACTTGATTGGGGAAAGCGCTTTGACATAATAGTGGGAATTGCTAGAGGACTTCTTTACCTTCATCGAGATTCACGATTGAGAATAATTCATAGGGATTTGAAAGCAAGCAACATTCTTTTAGATGGCGAGATGAATCCTAAAATCTCAGACTTTGGTCTAGCAAAAACATTTCGAGGTGATATATCTGAAGAAAATACAAATAGGATCATCGGAACTTATGAGAACCCAGTGTTGCCTCAACCTAAGCAACCCGGTTTTTACACAGAAAGGTTTCTTGATGCTGATACTTCTTCCACTGGAAAACACGCTTCTGTTTCAAACGAAGTGACAGTAACAATGCTGCGGGGTAGATAA

Network for GWHGAAZE004953

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	23	89	1.30E-13
PF01453.25	B_lectin	168	274	1.50E-36
PF00954.21	S_locus_glycop	322	410	2.70E-23
PF08276.12	PAN_2	432	495	1.70E-16
PF00069.26	Pkinase	569	633	3.90E-13
PF11883.9	DUF3403	636	678	7.20E-09

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0048544	biological_process	recognition of pollen
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.257
	SRR3591706	second leaf	0.963
	SRR3591707	mature leaf	2.617
	SRR3591708	Shoot apex	0.251
	SRR3591709	Stem	2.220
	SRR3591710	White floral bud	0.688
	SRR3591711	White flower	1.421
	SRR3591712	Green floral bud	0.631
	SRR3591713	Yellow flower	2.743
SRP173429	SRR8316895	Juvenile bud stage	0.318
	SRR8316896	Juvenile bud stage	1.058
	SRR8316897	Juvenile bud stage	1.008
	SRR8316894	Third green stage	0.181
	SRR8316900	Third green stage	0.303
	SRR8316901	Third green stage	0.364
	SRR8316898	Complete white stage	0.169
	SRR8316899	Complete white stage	0.579
	SRR8316903	Complete white stage	0.360
	SRR8316902	Silver flowering stage	0.572
	SRR8316904	Silver flowering stage	0.750
	SRR8316905	Silver flowering stage	0.440
	SRR8316906	Gold flowering stage	3.304
	SRR8316907	Gold flowering stage	2.218
	SRR8316908	Gold flowering stage	5.491
SRP132670	SRR6706286	Control	1.105
	SRR6706287	Light intensity 50%	0.889
	SRR6706288	Light intensity 20%	0.371
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.706
	CNS0095593	Slightly white alabastrum(diploid) 2	0.836
	CNS0095594	Slightly white alabastrum(diploid) 3	1.143
	CNS0095595	Whole white alabastrum(diploid) 2	1.209
	CNS0095596	Whole white alabastrum(diploid) 3	0.040
	CNS0095597	Whole white alabastrum(diploid) 4	0.505
	CNS0095598	Silvery flower (diploied) 1	1.159
	CNS0095599	Silvery flower (diploied) 2	1.713
	CNS0095600	Silvery flower (diploied) 3	0.927
	CNS0095601	Golden flower (diploid) 1	3.515
	CNS0095602	Golden flower (diploid) 2	2.346
	CNS0095603	Golden flower (diploid) 3	2.303
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.208
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.509
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.565
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.067
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.045
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.117
	CNS0095610	Silvery flower (diploied) 1	1.012
	CNS0095611	Silvery flower (diploied) 2	0.276
	CNS0095612	Silvery flower (diploied) 3	0.429
	CNS0095613	Golden flower (tetraploid) 1	1.390
	CNS0095614	Golden flower (tetraploid) 2	2.110
	CNS0095615	Golden flower (tetraploid) 3	0.873
CRA001975	CRR073297	Stem 1	0.109
	CRR073298	Stem 2	0.115
	CRR073299	Stem 3	0.069
	CRR073300	Leaf 1	0.010
	CRR073301	Leaf 2	0.083
	CRR073302	Leaf 3	0.142
	CRR073303	Juvenile bud 1	0.048
	CRR073304	Juvenile bud 2	0.004
	CRR073305	Juvenile bud 3	0.043
	CRR073306	Third green 1	0.096
	CRR073307	Third green 2	0.113
	CRR073308	Third green 3	0.153
	CRR073309	Second white 1	0.207
	CRR073310	Second white 2	0.116
	CRR073311	Second white 3	0.406
	CRR073312	Silver flowering 1	0.666
	CRR073313	Silver flowering 2	0.399
	CRR073314	Silver flowering 3	0.506
	CRR073315	Gold flowering 1	0.143
	CRR073316	Gold flowering 2	0.613
	CRR073317	Gold flowering 3	0.960
	CRR073318	Tawny withering 1	2.373
	CRR073319	Tawny withering 2	2.962
	CRR073320	Tawny withering 3	0.227