Gene detail

Detail information of GWHGAAZE005028

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KCW86480.1	6.9149E-159	hypothetical protein EUGRSUZ_B03144, partial [Eucalyptus grandis]
trEMBL	tr\|A0A059D8F9\|A0A059D8F9_EUCGR	3E-159	Uncharacterized protein {ECO:0000313\|EMBL:KCW86480.1} (Fragment)
TAIR10	AT1G79220.1	6E-105	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	1514080	1515258	-
GWHAAZE00000002	mRNA	1514080	1515258	-
GWHAAZE00000002	exon	1514080	1515258	-
GWHAAZE00000002	CDS	1514080	1515258	-

Transcript Sequence
>GWHTAAZE005034 ATGAGAGCTAAATTCAATGCTTTGATGATCAAATCCTTCCATTTCTTCTCACTCTCGAGAAACTTTATCTCCGTTCCCTTAACTTCTCCTCCTCCTCCTCCCGATACCCAAATTTTAAATCTGCGCCTCTTATGTACTAGAGTTGCCTTGCCTTCCACTGAAACCCTAGATGGCAAGGTGGAACAAGTACAAGGGGATGATGGATACCAGCCCAACAATTCCTCCCATGTTTTGAGGCAATGGGGTTGCGATGACAATGATATATACAAAATCTTTAGCAGGAGGCCATCTTTGCGGAACTGCAACATCGCTAACCTACAATCCAAGCTTCAAGTACTTTCTGAGCTAGGACTCACCTCTTCTGACCTCGTCAAGATTGTTAATTGTCGTCCCCGTTTCCTTAGTTGTCGAATCGACCAGCCCTTGAATCGTCGCCTCAAATATCTCCAAGACTTTTTTGGGTCCAAGGAAGTGCTTAACAAAGCCATTATTCGAAACCCTTCCCTTCTTACCTACGACTTCAAGGTCAGAATTAAACCCGTCATTGAGTTGTACGACAGTATGGGGCTTAGTAGGGAGGACTTGATTCTGATGCTTCTATCTCGCCCCACATTAATCCCACGAAGCTCGTTGAACGATGACAAGTTGGAGTACATTCGCAAGACTAAGGTCTCTAAGGATTCCAAGATGTATAAATATGTGGTCACTCTCATTGCAATTTCGCGGCTTGAGACTATCCGTGAAAAGATCGCAAACTTTGAGAAATTTGGGTTCTCGGATGAGGAGATTTTGGGTCTTTTTGGACGCTCTCCTCTTCTGTTGACGCTATCAATTGATAAGGTTCAGAGAAACATGACTTTTGTATTGGGCACAATGAAGCTACCTGCCAGAGTGGCACTTGAGCACCCTTTTTTGCTGTTCACCAATTTGGAGTCTGTGTTAAAGCCACGTGTGCTTCTAGCGGGGAAGATACAAGATATGGGTCTTGCCCCACAGATTAAGGGACATGCAATGTTGACAGCATTGAGGATGAAAGAGAAGCGTTTTGCTGAGGCATTTATCAAATGTCACCGTGATGATATTGCTAATGAATTAATGGAGTATTACAGGAAAGCAAAATGTGTTAAGCGATTAGCAGAATCCTCAAAAAAGAACTTGCATAAGGGATTCCCGTTCTAG

Network for GWHGAAZE005028

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.15	mTERF	77	151	1.40E-12
PF02536.15	mTERF	143	350	1.10E-29

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003690	molecular_function	double-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.106
	SRR3591706	second leaf	4.917
	SRR3591707	mature leaf	4.346
	SRR3591708	Shoot apex	7.938
	SRR3591709	Stem	8.273
	SRR3591710	White floral bud	6.779
	SRR3591711	White flower	7.124
	SRR3591712	Green floral bud	6.948
	SRR3591713	Yellow flower	3.872
SRP173429	SRR8316895	Juvenile bud stage	4.594
	SRR8316896	Juvenile bud stage	4.331
	SRR8316897	Juvenile bud stage	2.913
	SRR8316894	Third green stage	2.843
	SRR8316900	Third green stage	6.923
	SRR8316901	Third green stage	5.773
	SRR8316898	Complete white stage	1.542
	SRR8316899	Complete white stage	8.985
	SRR8316903	Complete white stage	4.067
	SRR8316902	Silver flowering stage	2.435
	SRR8316904	Silver flowering stage	2.918
	SRR8316905	Silver flowering stage	1.295
	SRR8316906	Gold flowering stage	5.162
	SRR8316907	Gold flowering stage	5.186
	SRR8316908	Gold flowering stage	5.780
SRP132670	SRR6706286	Control	6.367
	SRR6706287	Light intensity 50%	6.491
	SRR6706288	Light intensity 20%	6.474
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.865
	CNS0095593	Slightly white alabastrum(diploid) 2	3.649
	CNS0095594	Slightly white alabastrum(diploid) 3	3.736
	CNS0095595	Whole white alabastrum(diploid) 2	4.156
	CNS0095596	Whole white alabastrum(diploid) 3	3.064
	CNS0095597	Whole white alabastrum(diploid) 4	2.436
	CNS0095598	Silvery flower (diploied) 1	4.667
	CNS0095599	Silvery flower (diploied) 2	2.074
	CNS0095600	Silvery flower (diploied) 3	5.573
	CNS0095601	Golden flower (diploid) 1	3.688
	CNS0095602	Golden flower (diploid) 2	5.595
	CNS0095603	Golden flower (diploid) 3	5.604
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.745
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.441
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.748
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.876
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.511
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.836
	CNS0095610	Silvery flower (diploied) 1	4.467
	CNS0095611	Silvery flower (diploied) 2	4.888
	CNS0095612	Silvery flower (diploied) 3	5.518
	CNS0095613	Golden flower (tetraploid) 1	3.344
	CNS0095614	Golden flower (tetraploid) 2	3.794
	CNS0095615	Golden flower (tetraploid) 3	3.737
CRA001975	CRR073297	Stem 1	7.691
	CRR073298	Stem 2	6.197
	CRR073299	Stem 3	9.444
	CRR073300	Leaf 1	5.804
	CRR073301	Leaf 2	7.193
	CRR073302	Leaf 3	7.582
	CRR073303	Juvenile bud 1	7.523
	CRR073304	Juvenile bud 2	6.645
	CRR073305	Juvenile bud 3	10.229
	CRR073306	Third green 1	0.744
	CRR073307	Third green 2	1.771
	CRR073308	Third green 3	2.495
	CRR073309	Second white 1	3.453
	CRR073310	Second white 2	1.004
	CRR073311	Second white 3	3.246
	CRR073312	Silver flowering 1	2.457
	CRR073313	Silver flowering 2	2.040
	CRR073314	Silver flowering 3	1.766
	CRR073315	Gold flowering 1	8.712
	CRR073316	Gold flowering 2	11.016
	CRR073317	Gold flowering 3	8.659
	CRR073318	Tawny withering 1	7.040
	CRR073319	Tawny withering 2	6.191
	CRR073320	Tawny withering 3	6.429