Gene detail

Detail information of GWHGAAZE005100

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006353111.1	PREDICTED: acetolactate synthase small subunit 1, chloroplastic-like [Solanum tuberosum]
Swissprot	tr\|Q93YZ7\|ILVH2_ARATH	Acetolactate synthase small subunit 2, chloroplastic (Precursor)
trEMBL	tr\|A0A022R9H5\|A0A022R9H5_ERYGU	Uncharacterized protein {ECO:0000313\|EMBL:EYU36664.1}
TAIR10	AT2G31810.1	ACT domain-containing small subunit of acetolactate synthase protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	2737221	2742457	+
GWHAAZE00000002	mRNA	2737221	2742457	+
GWHAAZE00000002	exon	2737221	2737278	+
GWHAAZE00000002	exon	2737433	2737926	+
GWHAAZE00000002	exon	2738303	2738386	+
GWHAAZE00000002	exon	2738520	2738588	+
GWHAAZE00000002	exon	2738846	2738929	+
GWHAAZE00000002	exon	2739060	2739212	+
GWHAAZE00000002	exon	2739287	2739337	+
GWHAAZE00000002	exon	2739840	2739926	+
GWHAAZE00000002	exon	2740621	2740725	+
GWHAAZE00000002	exon	2740817	2740939	+
GWHAAZE00000002	exon	2741951	2742103	+
GWHAAZE00000002	exon	2742215	2742280	+
GWHAAZE00000002	exon	2742374	2742457	+
GWHAAZE00000002	CDS	2737221	2737278	+
GWHAAZE00000002	CDS	2737433	2737926	+
GWHAAZE00000002	CDS	2738303	2738386	+
GWHAAZE00000002	CDS	2738520	2738588	+
GWHAAZE00000002	CDS	2738846	2738929	+
GWHAAZE00000002	CDS	2739060	2739212	+
GWHAAZE00000002	CDS	2739287	2739337	+
GWHAAZE00000002	CDS	2739840	2739926	+
GWHAAZE00000002	CDS	2740621	2740725	+
GWHAAZE00000002	CDS	2740817	2740939	+
GWHAAZE00000002	CDS	2741951	2742103	+
GWHAAZE00000002	CDS	2742215	2742280	+
GWHAAZE00000002	CDS	2742374	2742457	+

Transcript Sequence
>GWHTAAZE005106 ATGCCGATGATAAGACGGTCTCCATCACCGATTCAGCTACACCTACCACCAGACCAAAAGGTTAGCTCTAATACTAAATCTTCTGCAAAAGCCAAAGCAAGCCGTGTACCGTGTTGTAAATTGCGCTCTTTGAATAAAAGACAATTCACCCTATTACTTGTGGACTCTGATTTTTGTTCCTTAGCTTTGAAACAAGCACTATTTAGGCAGTTTCGTTTGATTAATCTGGATGAATTATGGATTCGTTTACAATGTCCACAAGCGGTTTATCAAACTTTCTTGTTTGGATTGATGAATCTAACCTTTGGTCAGGGTGATGTGTTATTGGTTTACCACAGGGTGAGACGCCACACAATTTCAGTATTTGTTGGTGATGAGAGTGGAATGATAAATCGGATTGCGGGAGTGTTTGCAAGGAGGGGATATAACATTGAGTCCCTTGCCGTTGGTTTGAACAAAGACAAGGCTCTCTTCACTATAGTTGTATCTGGAACTGAAAGGGTGTTACAACAAGTTATGGAACAGCTTCAAAAGCTTGTCAATGTTATCAAGGTTGAAGATCTCTCGAAGGAACCACAGGTGGAACGTGAACTCATGCTTATAAAAATCAATGCGGATCCAAAGTACCATGCAGAGGTCATGTGGTTAGTGGACATATTTAGAGCAAAAATTGTGGATATCTCAGAACATTCACTAACTATTGAGGTAACTGGAGATCCTGGAAAGATGGTTGCGGTTCAGAGGAACTTGAGCAAGTTTGGAATTGAAGAAATTGCCAGAACCGGAAAGATTGCCTTGAGAAGGGAGAAGATGGGTGAATCTGCTCCTTTTTGGCGATTTTCAGCAGCTTCATATCCAGATCTCGAAGGTACATTACCTGTAGATACTCGTGTAGGGGCTATAAAGACAACAGACTTTGGAGAATCCAATGCATCAGTTGGGAAAATACCAGGAGATGATGTAGGAGCTGCAAGGCCATCACTTAGTAATACTGGAGATGTCTATCCTGTGGAGCCAGTAGATGACTTTTCAGTCAATCAAGTTCTTGATGCTCACTGGGGTGTCCTCAATGAAGAAGATACAAGTGGACTTCGCTCACACACTTTATCTGTGCTCGTAAACGACTCTCCTGGAGTTCTCAACATATTAACAGGGGTTTTTGCTCGAAGAGGATACAATATTCAGAGTTTAGCTGTTGGTCACTCTGAAATTGAGGGACTTTCTCGAGTTACAACTGTAGTTCCTGGTACAGACGAATCCATTAGCAAGTTGGTGCAGCAAATTTATAAATTGATAGATGTTCACGAGGTTCAGGATTTCACCCACATGCCATTTGCAGAGAGAGAACTGATGTTGATAAAGATTGCTGTGAATGCCACTGCCCGACGCAATGTTCTTGACATTGCCAGCATTTTTAGAGCGAAAGCTGTTGATGTGTCTGATCATACAATAACTCTTGAGCTTACAGGAGATTTGCACAAGATGGTTGCTCTGCAGAGATTACTCGAGCCATATGGCATTTGTGAGGTGGCTAGAACAGGGCGTTTGGCACTGGTTCGTGAATCGGGTGTGGATTCAAGGTACCTTCGTGGATATTCTTATCCATTGTAA

Network for GWHGAAZE005100

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01842.26	ACT	117	180	1.10E-11
PF10369.10	ALS_ss_C	196	268	1.00E-25
PF13710.7	ACT_5	375	437	2.70E-11
PF10369.10	ALS_ss_C	448	520	7.80E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01653	E2.2.1.6S, ilvH, ilvN	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		2-Oxocarboxylic acid metabolism	map01210
		Biosynthesis of amino acids	map01230
		Butanoate metabolism	map00650
		C5-Branched dibasic acid metabolism	map00660
		Valine, leucine and isoleucine biosynthesis	map00290
		Pantothenate and CoA biosynthesis	map00770

Gene Ontology

GO term	Ontology	Name
GO:0009082	biological_process	branched-chain amino acid biosynthetic process
GO:1990610	molecular_function	acetolactate synthase regulator activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.618
	SRR3591706	second leaf	18.299
	SRR3591707	mature leaf	29.354
	SRR3591708	Shoot apex	23.869
	SRR3591709	Stem	24.114
	SRR3591710	White floral bud	12.357
	SRR3591711	White flower	17.950
	SRR3591712	Green floral bud	24.165
	SRR3591713	Yellow flower	16.739
SRP173429	SRR8316895	Juvenile bud stage	19.463
	SRR8316896	Juvenile bud stage	27.688
	SRR8316897	Juvenile bud stage	13.508
	SRR8316894	Third green stage	10.847
	SRR8316900	Third green stage	38.286
	SRR8316901	Third green stage	30.387
	SRR8316898	Complete white stage	11.453
	SRR8316899	Complete white stage	41.412
	SRR8316903	Complete white stage	15.004
	SRR8316902	Silver flowering stage	6.411
	SRR8316904	Silver flowering stage	9.317
	SRR8316905	Silver flowering stage	3.301
	SRR8316906	Gold flowering stage	12.093
	SRR8316907	Gold flowering stage	14.025
	SRR8316908	Gold flowering stage	17.011
SRP132670	SRR6706286	Control	16.918
	SRR6706287	Light intensity 50%	19.079
	SRR6706288	Light intensity 20%	22.528
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.734
	CNS0095593	Slightly white alabastrum(diploid) 2	25.537
	CNS0095594	Slightly white alabastrum(diploid) 3	20.106
	CNS0095595	Whole white alabastrum(diploid) 2	23.873
	CNS0095596	Whole white alabastrum(diploid) 3	27.399
	CNS0095597	Whole white alabastrum(diploid) 4	25.252
	CNS0095598	Silvery flower (diploied) 1	19.160
	CNS0095599	Silvery flower (diploied) 2	19.295
	CNS0095600	Silvery flower (diploied) 3	23.961
	CNS0095601	Golden flower (diploid) 1	17.285
	CNS0095602	Golden flower (diploid) 2	19.732
	CNS0095603	Golden flower (diploid) 3	20.285
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.041
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.510
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.032
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.834
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.591
	CNS0095609	Whole white alabastrum(tetraploid) 3	34.930
	CNS0095610	Silvery flower (diploied) 1	28.843
	CNS0095611	Silvery flower (diploied) 2	32.523
	CNS0095612	Silvery flower (diploied) 3	26.899
	CNS0095613	Golden flower (tetraploid) 1	17.489
	CNS0095614	Golden flower (tetraploid) 2	22.291
	CNS0095615	Golden flower (tetraploid) 3	8.716
CRA001975	CRR073297	Stem 1	26.998
	CRR073298	Stem 2	24.565
	CRR073299	Stem 3	20.439
	CRR073300	Leaf 1	38.077
	CRR073301	Leaf 2	30.016
	CRR073302	Leaf 3	33.003
	CRR073303	Juvenile bud 1	46.574
	CRR073304	Juvenile bud 2	36.043
	CRR073305	Juvenile bud 3	40.096
	CRR073306	Third green 1	4.057
	CRR073307	Third green 2	3.067
	CRR073308	Third green 3	3.876
	CRR073309	Second white 1	8.811
	CRR073310	Second white 2	7.500
	CRR073311	Second white 3	6.639
	CRR073312	Silver flowering 1	6.731
	CRR073313	Silver flowering 2	5.931
	CRR073314	Silver flowering 3	6.956
	CRR073315	Gold flowering 1	27.688
	CRR073316	Gold flowering 2	44.507
	CRR073317	Gold flowering 3	20.041
	CRR073318	Tawny withering 1	14.928
	CRR073319	Tawny withering 2	16.901
	CRR073320	Tawny withering 3	12.892