Gene detail

Detail information of GWHGAAZE005147

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008456608.1	1.6021E-70	PREDICTED: transcription factor DIVARICATA [Cucumis melo]
Swissprot	tr\|Q8S9H7\|DIV_ANTMA	1E-47	Transcription factor DIVARICATA
trEMBL	tr\|A0A0A0KE73\|A0A0A0KE73_CUCSA	2E-70	Syringolide-induced protein 1-3-1B {ECO:0000313\|EMBL:KGN46046.1}
TAIR10	AT5G04760.1	1E-38	Duplicated homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	3360687	3364681	-
GWHAAZE00000002	mRNA	3360687	3364681	-
GWHAAZE00000002	exon	3364173	3364681	-
GWHAAZE00000002	exon	3360687	3360948	-
GWHAAZE00000002	five_prime_UTR	3364562	3364681	-
GWHAAZE00000002	CDS	3364173	3364561	-
GWHAAZE00000002	CDS	3360687	3360948	-

Transcript Sequence
>GWHTAAZE005153 TTTGTCTCTCCTCTCCAATTTGCGTTTTCCCGCGAAGGTACAAAACCCCTAACTGGTTTTATGCATTTGAATCATACCTCTAAACCCCTCCACCAATAAACTTTTTCTCTCAATTGCAATATGTTTCATAATAGTTCGATTTCCAATTCCACGACTGTTGGTTCGACGTGGACGAGATCCGATAACAAGCTGTTCGAACTGGCGTTGGTTCAAGTACCGGAGGAGGAAACCATTGACCGGTGGGAGAGAATTGCCGCAATAGTCCCTGGAAAGTCACCCCAGGAGTTAAAGGAACATTACTGTGCTTTGGTTTACGATGTGATTGCGATTGATTCAGGTATGGTTGAGTTACCTAGGTACAACAGGGATAGGTCAGAGGCCGAGCCGCCGGTGATGCGAGAATTGTTTGAAGGAGAAGGGGAGGTGGCAGAATGGTACGGAAGCAAAATCAAGCGCGGGGAGGTGGTCGAGAGGAAGAAGGGCACTCCTTGGACAGAGAATGAGCACAGGTTATTTCTGGAGGGACTGAAGAAGTATGGGAAGGGTGATTGGAGGAGCATTTCGAGACTGGTAGTGAAGACAAGAACATCCACACAAGTTGCTAGCCATGCCCAAAAATACTTCCTTCGCCGCTCCTCTTTGAAGAAAGACCGTAAGAGGTCAAGCATCCACGACATCACCACTACCGCCAATCCGGTGCCTCTGCCCACAAACTTCCCGACTCAAGGAGGCAACTCACCAGATAATCAAAACTGGGGCTTCCCCACGTGA

Network for GWHGAAZE005147

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	123	167	2.00E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.316
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.512
	SRR3591708	Shoot apex	0.587
	SRR3591709	Stem	1.383
	SRR3591710	White floral bud	1.267
	SRR3591711	White flower	1.372
	SRR3591712	Green floral bud	0.652
	SRR3591713	Yellow flower	0.321
SRP173429	SRR8316895	Juvenile bud stage	1.314
	SRR8316896	Juvenile bud stage	1.278
	SRR8316897	Juvenile bud stage	0.791
	SRR8316894	Third green stage	0.512
	SRR8316900	Third green stage	1.102
	SRR8316901	Third green stage	1.112
	SRR8316898	Complete white stage	0.059
	SRR8316899	Complete white stage	1.225
	SRR8316903	Complete white stage	0.693
	SRR8316902	Silver flowering stage	0.440
	SRR8316904	Silver flowering stage	0.591
	SRR8316905	Silver flowering stage	0.228
	SRR8316906	Gold flowering stage	0.954
	SRR8316907	Gold flowering stage	0.249
	SRR8316908	Gold flowering stage	0.760
SRP132670	SRR6706286	Control	1.299
	SRR6706287	Light intensity 50%	1.067
	SRR6706288	Light intensity 20%	0.935
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.182
	CNS0095593	Slightly white alabastrum(diploid) 2	1.121
	CNS0095594	Slightly white alabastrum(diploid) 3	1.127
	CNS0095595	Whole white alabastrum(diploid) 2	0.974
	CNS0095596	Whole white alabastrum(diploid) 3	0.592
	CNS0095597	Whole white alabastrum(diploid) 4	0.217
	CNS0095598	Silvery flower (diploied) 1	2.360
	CNS0095599	Silvery flower (diploied) 2	2.064
	CNS0095600	Silvery flower (diploied) 3	0.422
	CNS0095601	Golden flower (diploid) 1	2.332
	CNS0095602	Golden flower (diploid) 2	1.542
	CNS0095603	Golden flower (diploid) 3	0.940
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.916
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.124
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.918
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.741
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.361
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.507
	CNS0095610	Silvery flower (diploied) 1	0.567
	CNS0095611	Silvery flower (diploied) 2	0.842
	CNS0095612	Silvery flower (diploied) 3	0.120
	CNS0095613	Golden flower (tetraploid) 1	1.116
	CNS0095614	Golden flower (tetraploid) 2	0.634
	CNS0095615	Golden flower (tetraploid) 3	0.494
CRA001975	CRR073297	Stem 1	1.510
	CRR073298	Stem 2	1.388
	CRR073299	Stem 3	0.835
	CRR073300	Leaf 1	1.419
	CRR073301	Leaf 2	1.252
	CRR073302	Leaf 3	0.234
	CRR073303	Juvenile bud 1	0.606
	CRR073304	Juvenile bud 2	0.397
	CRR073305	Juvenile bud 3	0.535
	CRR073306	Third green 1	0.055
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.721
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.644
	CRR073313	Silver flowering 2	0.543
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.701
	CRR073316	Gold flowering 2	0.471
	CRR073317	Gold flowering 3	0.449
	CRR073318	Tawny withering 1	0.794
	CRR073319	Tawny withering 2	1.694
	CRR073320	Tawny withering 3	1.838