Detail information of GWHGAAZE005160


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP10580.11.56121E-44unnamed protein product [Coffea canephora]
Swissprottr|Q8RX29|ATL70_ARATH2E-34RING-H2 finger protein ATL70
trEMBLtr|A0A068UPW0|A0A068UPW0_COFCA6E-45Coffea canephora DH200=94 genomic scaffold, scaffold_45 {ECO:0000313|EMBL:CDP10580.1}
TAIR10AT2G35910.19E-29RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene36060423606515+
GWHAAZE00000002mRNA36060423606515+
GWHAAZE00000002exon36060423606515+
GWHAAZE00000002CDS36060423606515+
Transcript Sequence

Network for GWHGAAZE005160

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_2941364.70E-14
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.192
SRR3591706second leaf0.132
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.859
SRR3591709Stem1.800
SRR3591710White floral bud1.608
SRR3591711White flower0.318
SRR3591712Green floral bud1.552
SRR3591713Yellow flower0.956
SRP173429 SRR8316895Juvenile bud stage 0.187
SRR8316896Juvenile bud stage 0.794
SRR8316897Juvenile bud stage 0.117
SRR8316894Third green stage 0.328
SRR8316900Third green stage 0.596
SRR8316901Third green stage 0.000
SRR8316898Complete white stage 0.199
SRR8316899Complete white stage 0.595
SRR8316903Complete white stage 0.723
SRR8316902Silver flowering stage0.594
SRR8316904Silver flowering stage0.600
SRR8316905Silver flowering stage0.378
SRR8316906Gold flowering stage 0.748
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.627
SRR6706287Light intensity 50%0.604
SRR6706288Light intensity 20%0.334
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.478
CNS0095593Slightly white alabastrum(diploid) 21.530
CNS0095594Slightly white alabastrum(diploid) 30.777
CNS0095595Whole white alabastrum(diploid) 20.869
CNS0095596Whole white alabastrum(diploid) 30.132
CNS0095597Whole white alabastrum(diploid) 40.863
CNS0095598Silvery flower (diploied) 10.820
CNS0095599Silvery flower (diploied) 20.986
CNS0095600Silvery flower (diploied) 30.496
CNS0095601Golden flower (diploid) 10.850
CNS0095602Golden flower (diploid) 20.272
CNS0095603Golden flower (diploid) 30.592
CNS0095604Slightly white alabastrum(tetraploid) 12.073
CNS0095605Slightly white alabastrum(tetraploid) 20.650
CNS0095606Slightly white alabastrum(tetraploid) 30.657
CNS0095607Whole white alabastrum(tetraploid) 10.722
CNS0095608Whole white alabastrum(tetraploid) 21.113
CNS0095609Whole white alabastrum(tetraploid) 30.863
CNS0095610Silvery flower (diploied) 10.244
CNS0095611Silvery flower (diploied) 20.291
CNS0095612Silvery flower (diploied) 30.915
CNS0095613Golden flower (tetraploid) 11.931
CNS0095614Golden flower (tetraploid) 21.140
CNS0095615Golden flower (tetraploid) 30.741
CRA001975CRR073297Stem 10.430
CRR073298Stem 21.170
CRR073299Stem 30.177
CRR073300Leaf 11.230
CRR073301Leaf 22.223
CRR073302Leaf 30.274
CRR073303Juvenile bud 10.403
CRR073304Juvenile bud 20.355
CRR073305Juvenile bud 30.281
CRR073306Third green 10.000
CRR073307Third green 20.369
CRR073308Third green 30.138
CRR073309Second white 10.000
CRR073310Second white 20.497
CRR073311Second white 30.835
CRR073312Silver flowering 10.285
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.263
CRR073319Tawny withering 21.213
CRR073320Tawny withering 30.093