Detail information of GWHGAAZE005249


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011097806.10PREDICTED: protein PIR [Sesamum indicum]
Swissprottr|Q5S2C3|PIR_ARATH0Protein PIR
trEMBLtr|M5W771|M5W771_PRUPE0Uncharacterized protein {ECO:0000313|EMBL:EMJ09587.1}
TAIR10AT5G18410.20transcription activators

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene49116444919025+
GWHAAZE00000002mRNA49116444919025+
GWHAAZE00000002exon49116444911751+
GWHAAZE00000002exon49118514911921+
GWHAAZE00000002exon49135614913653+
GWHAAZE00000002exon49146184914687+
GWHAAZE00000002exon49148354914899+
GWHAAZE00000002exon49156904915885+
GWHAAZE00000002exon49159694916112+
GWHAAZE00000002exon49166464916732+
GWHAAZE00000002exon49173574917572+
GWHAAZE00000002exon49179144918125+
GWHAAZE00000002exon49188094919025+
GWHAAZE00000002CDS49116444911751+
GWHAAZE00000002CDS49118514911921+
GWHAAZE00000002CDS49135614913653+
GWHAAZE00000002CDS49146184914687+
GWHAAZE00000002CDS49148354914899+
GWHAAZE00000002CDS49156904915885+
GWHAAZE00000002CDS49159694916112+
GWHAAZE00000002CDS49166464916732+
GWHAAZE00000002CDS49173574917572+
GWHAAZE00000002CDS49179144918125+
GWHAAZE00000002CDS49188094919025+
Transcript Sequence

Network for GWHGAAZE005249

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07159.13DUF1394641231.00E-05
PF05994.12FragX_IP3004711.90E-56
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05749CYFIP RNA transport map03013
Regulation of actin cytoskeletonmap04810

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf31.549
SRR3591706second leaf12.737
SRR3591707mature leaf8.150
SRR3591708Shoot apex11.574
SRR3591709Stem20.540
SRR3591710White floral bud12.149
SRR3591711White flower14.407
SRR3591712Green floral bud19.163
SRR3591713Yellow flower7.557
SRP173429 SRR8316895Juvenile bud stage 9.555
SRR8316896Juvenile bud stage 12.903
SRR8316897Juvenile bud stage 7.068
SRR8316894Third green stage 8.013
SRR8316900Third green stage 18.217
SRR8316901Third green stage 17.217
SRR8316898Complete white stage 3.350
SRR8316899Complete white stage 12.241
SRR8316903Complete white stage 7.243
SRR8316902Silver flowering stage3.793
SRR8316904Silver flowering stage6.084
SRR8316905Silver flowering stage2.442
SRR8316906Gold flowering stage 6.894
SRR8316907Gold flowering stage 7.854
SRR8316908Gold flowering stage 7.277
SRP132670SRR6706286Control12.144
SRR6706287Light intensity 50%12.664
SRR6706288Light intensity 20%13.782
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.021
CNS0095593Slightly white alabastrum(diploid) 22.808
CNS0095594Slightly white alabastrum(diploid) 35.020
CNS0095595Whole white alabastrum(diploid) 25.133
CNS0095596Whole white alabastrum(diploid) 33.589
CNS0095597Whole white alabastrum(diploid) 43.607
CNS0095598Silvery flower (diploied) 17.100
CNS0095599Silvery flower (diploied) 27.035
CNS0095600Silvery flower (diploied) 313.936
CNS0095601Golden flower (diploid) 13.723
CNS0095602Golden flower (diploid) 212.727
CNS0095603Golden flower (diploid) 312.982
CNS0095604Slightly white alabastrum(tetraploid) 17.525
CNS0095605Slightly white alabastrum(tetraploid) 25.868
CNS0095606Slightly white alabastrum(tetraploid) 321.620
CNS0095607Whole white alabastrum(tetraploid) 15.526
CNS0095608Whole white alabastrum(tetraploid) 26.036
CNS0095609Whole white alabastrum(tetraploid) 319.054
CNS0095610Silvery flower (diploied) 110.276
CNS0095611Silvery flower (diploied) 216.525
CNS0095612Silvery flower (diploied) 311.776
CNS0095613Golden flower (tetraploid) 12.668
CNS0095614Golden flower (tetraploid) 27.742
CNS0095615Golden flower (tetraploid) 312.293
CRA001975CRR073297Stem 115.200
CRR073298Stem 213.822
CRR073299Stem 311.372
CRR073300Leaf 116.301
CRR073301Leaf 211.977
CRR073302Leaf 312.838
CRR073303Juvenile bud 112.135
CRR073304Juvenile bud 28.465
CRR073305Juvenile bud 313.320
CRR073306Third green 13.932
CRR073307Third green 22.226
CRR073308Third green 34.208
CRR073309Second white 13.900
CRR073310Second white 25.513
CRR073311Second white 37.342
CRR073312Silver flowering 14.794
CRR073313Silver flowering 24.500
CRR073314Silver flowering 34.645
CRR073315Gold flowering 13.828
CRR073316Gold flowering 26.927
CRR073317Gold flowering 33.442
CRR073318Tawny withering 15.008
CRR073319Tawny withering 25.054
CRR073320Tawny withering 37.037