Gene detail

Detail information of GWHGAAZE005306

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002273012.1	0	PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Vitis vinifera]
Swissprot	tr\|Q39030\|KPK2_ARATH	0	Serine/threonine-protein kinase AtPK2/AtPK19
trEMBL	tr\|F6GXW1\|F6GXW1_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB44762.1}
TAIR10	AT3G08720.2	9E-174	serine/threonine protein kinase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	5802696	5805336	-
GWHAAZE00000002	mRNA	5802696	5805336	-
GWHAAZE00000002	exon	5804692	5805336	-
GWHAAZE00000002	exon	5804532	5804614	-
GWHAAZE00000002	exon	5804406	5804448	-
GWHAAZE00000002	exon	5804060	5804233	-
GWHAAZE00000002	exon	5803716	5803823	-
GWHAAZE00000002	exon	5802696	5803231	-
GWHAAZE00000002	CDS	5804692	5805336	-
GWHAAZE00000002	CDS	5804532	5804614	-
GWHAAZE00000002	CDS	5804406	5804448	-
GWHAAZE00000002	CDS	5804060	5804233	-
GWHAAZE00000002	CDS	5803716	5803823	-
GWHAAZE00000002	CDS	5802932	5803231	-
GWHAAZE00000002	three_prime_UTR	5802696	5802931	-

Transcript Sequence
>GWHTAAZE005312 ATGGTTTCTTCTCAGCTAAACATTCTTACGAAAACTCGCACGTGTAAGTCATTTCAAAACCAATTACTATTCCCTATCAATCCTCCTGATGTTCCCTCAGATCACGTTGAGCTAGACTTTTCGGACGTATTTGGTCCTCTACCAGTTCAAGACTCAAATGAATTAGATGCAAGTGAGCTCATATATGACGACCCGGTTGTCATTTATAGCCGATCACATTCTCTGGTGGGTCCTTCTGCTTGTGTTAGTCACTCTTTGAAGTTGAGCAAGCTCACTATACACGAGACAGAAGATTCAGTGGAACTTTTTGAGTGTGTCAATGATGATGATATAATAATAGCAGAAGCTCAAGATTCTTCTGTGCATGATTCTGCTGAGGAATCTCTTGCATTAGTTAACGATAATTTTGCGAAGGTCCAGAGTGTAGGACTTGAAGATTTTGAGGTTATGAAGGTTGTTGGGCAGGGTGCATTTGGAAAAGTTTTTCAGGTTAGAAAGAAGGGTACTTCAGAAGTTTATGCAATGAAGGTAATGAGGAAGGATAAGATTATGGAGAAGAACCATGCTGAATACATGAAAGCTGAGAGGGATATTTTGACAAAGATAGATCATCCCTTTATCGTCCAGCTCAGATACTCGTTCCAAACTAAATATAGACTTTACCTAGTGCTGGACTTTATGAATGGGGGACACCTCTTTTTTCAGCTCTACCACCAAGGCCTTTTCAGAGAGGATCTGGCACGCATATACACTGCAGAGATCATTTCAGCGGCCTTATTGACGGATTTTGGCCTGGCAAAGCAATTTGAAGAGAATAAAAGATCAAACTCCTTGTGTGGAACGGTAGAATATATGTCACCTGAAATTGTTCTTGGAAAGGGTCATGATAAGGCTGCAGACTGGTGGAGTGTTGGAATCTTATTGTTTGAGATGCTCACTGGGAAGCCTCCTTTTGTTGGTGGGAACCGGGAAAAAATTCAGCAGAAGATAATAAAGGATAAAATTAAGCTGCCAGCATTTTTGTCCAGCGAAGCACATTCTCTGTTGAAAGGGCTGCTACAAAAGGACCCAGGCAAGAGGCTGGGCAGTGGACCAACAGGGAGCGAGGATGTAAAACGCCATAAATGGTTCAAGCCAATAAATTGGAAGAAATTGGAGGCAAGGGAAATTCAGCCGAGTTTCTGTCCCGAAGTTGCCGGAAAACAATGCATAGCCAACTTTGATAAGCGCTGGACTGACATGCCATTGTTGGACTCTCCTGCTTCTAGCCCAAAAACTGAGAACCTCTTCCAGGGGTTTACTTATGTGAGACCAGCGTCGTCTTATCTTCAGAGGAATAATCCTCTTTGCTAGTTTTTATGGCTTCTCTACTGAGCTTCTTGATGATCATGATAATGATAACATATTTTTGAATTTGTCAAATAGCCCCCTAGCTAATTGTGTTGTTTATCTAAGGACCTCCAGGCTTTGTAACACCATGTTGAAGGTTGGACAACTTTGGATTATAATGTATTGGATGTAAACCCTAATTGTTATCAACACTGAGGTTTATGGATTTTTTTTTGATTGAGAAACAATTTGCCTTTCTG

Network for GWHGAAZE005306

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	147	257	2.80E-22
PF00069.26	Pkinase	260	377	4.20E-28
PF00433.25	Pkinase_C	398	435	8.00E-05

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	AGC-Pl

KEGG pathway

KO	Enzyme	pathway	mapID
K04688	RPS6KB	ErbB signaling pathway	map04012
		TGF-beta signaling pathway	map04350
		Apelin signaling pathway	map04371
		HIF-1 signaling pathway	map04066
		PI3K-Akt signaling pathway	map04151
		AMPK signaling pathway	map04152
		mTOR signaling pathway	map04150
		Autophagy - animal	map04140
		Fc gamma R-mediated phagocytosis	map04666
		Insulin signaling pathway	map04910
		Axon regeneration	map04361
		Longevity regulating pathway	map04211
		Longevity regulating pathway - worm	map04212
		Longevity regulating pathway - multiple species	map04213
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.412
	SRR3591706	second leaf	21.623
	SRR3591707	mature leaf	18.285
	SRR3591708	Shoot apex	21.331
	SRR3591709	Stem	19.764
	SRR3591710	White floral bud	36.029
	SRR3591711	White flower	25.869
	SRR3591712	Green floral bud	20.276
	SRR3591713	Yellow flower	30.981
SRP173429	SRR8316895	Juvenile bud stage	7.655
	SRR8316896	Juvenile bud stage	9.254
	SRR8316897	Juvenile bud stage	6.761
	SRR8316894	Third green stage	4.919
	SRR8316900	Third green stage	11.856
	SRR8316901	Third green stage	14.311
	SRR8316898	Complete white stage	9.431
	SRR8316899	Complete white stage	19.239
	SRR8316903	Complete white stage	16.831
	SRR8316902	Silver flowering stage	7.073
	SRR8316904	Silver flowering stage	10.413
	SRR8316905	Silver flowering stage	4.424
	SRR8316906	Gold flowering stage	14.430
	SRR8316907	Gold flowering stage	15.214
	SRR8316908	Gold flowering stage	17.874
SRP132670	SRR6706286	Control	7.622
	SRR6706287	Light intensity 50%	8.619
	SRR6706288	Light intensity 20%	8.806
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.401
	CNS0095593	Slightly white alabastrum(diploid) 2	14.572
	CNS0095594	Slightly white alabastrum(diploid) 3	14.992
	CNS0095595	Whole white alabastrum(diploid) 2	10.063
	CNS0095596	Whole white alabastrum(diploid) 3	11.028
	CNS0095597	Whole white alabastrum(diploid) 4	12.653
	CNS0095598	Silvery flower (diploied) 1	11.719
	CNS0095599	Silvery flower (diploied) 2	10.876
	CNS0095600	Silvery flower (diploied) 3	11.092
	CNS0095601	Golden flower (diploid) 1	12.333
	CNS0095602	Golden flower (diploid) 2	12.680
	CNS0095603	Golden flower (diploid) 3	12.089
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.403
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.828
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.696
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.974
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.726
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.692
	CNS0095610	Silvery flower (diploied) 1	18.876
	CNS0095611	Silvery flower (diploied) 2	11.571
	CNS0095612	Silvery flower (diploied) 3	22.079
	CNS0095613	Golden flower (tetraploid) 1	17.271
	CNS0095614	Golden flower (tetraploid) 2	16.883
	CNS0095615	Golden flower (tetraploid) 3	12.329
CRA001975	CRR073297	Stem 1	9.387
	CRR073298	Stem 2	7.303
	CRR073299	Stem 3	4.125
	CRR073300	Leaf 1	6.735
	CRR073301	Leaf 2	6.155
	CRR073302	Leaf 3	2.243
	CRR073303	Juvenile bud 1	3.365
	CRR073304	Juvenile bud 2	4.259
	CRR073305	Juvenile bud 3	4.767
	CRR073306	Third green 1	6.238
	CRR073307	Third green 2	3.959
	CRR073308	Third green 3	6.981
	CRR073309	Second white 1	5.421
	CRR073310	Second white 2	6.725
	CRR073311	Second white 3	6.225
	CRR073312	Silver flowering 1	8.885
	CRR073313	Silver flowering 2	7.094
	CRR073314	Silver flowering 3	8.466
	CRR073315	Gold flowering 1	5.102
	CRR073316	Gold flowering 2	9.939
	CRR073317	Gold flowering 3	0.974
	CRR073318	Tawny withering 1	9.226
	CRR073319	Tawny withering 2	18.771
	CRR073320	Tawny withering 3	8.699