Gene detail

Detail information of GWHGAAZE005328

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004253400.1	6.3173E-169	PREDICTED: peroxidase 70-like [Solanum lycopersicum]
Swissprot	tr\|P22195\|PER1_ARAHY	5E-123	Cationic peroxidase 1 (Precursor)
trEMBL	tr\|K4AR66\|K4AR66_SOLLC	2E-169	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc00g072400.2.1}
TAIR10	AT5G05340.1	2E-90	Peroxidase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	6244424	6245639	-
GWHAAZE00000002	mRNA	6244424	6245639	-
GWHAAZE00000002	exon	6244424	6244972	-
GWHAAZE00000002	exon	6245098	6245292	-
GWHAAZE00000002	exon	6245421	6245639	-
GWHAAZE00000002	CDS	6245421	6245639	-
GWHAAZE00000002	CDS	6245098	6245292	-
GWHAAZE00000002	CDS	6244424	6244972	-

Transcript Sequence
>GWHTAAZE005334 ATGGCTTCACATAGGTTCTTCTTTTTCTATTTCCTTGCCTTCGTTGTGTTTTCTCTAGCAAATACAGCTTTATCTGCATCTCTTTCTCCTAATTACTACCACTCAGTGTGTCCCCAAGCTTTGTCAACCATCAAACGTGTTGTCGAGGACACAGTCAAGCAAGAGCCACGCATGGGCGCTTCTTTACTGCGTCTACACTTCCACGATTGTTTTGTCAATGGATGTGATGCTTCGGTTCTTTTAGACCAAACATCAAAAATTGACAGTGAAAAAAATGCGCTTGCAAATTTGAATTCGACAAGAGGATTTGGAGTGATTGATAAGATCAAAAGGGAGGTCGACAAGGCCTGTGGACGTCCAGTCGTGTCTTGTGCTGATATTTTAACCGTTGCTGCTCGTGACTCTGTTGTTGCGCTAGGTGGACCAACATGGAAAGTACCACTAGGCAGGAGGGACTCTACAACTGCAAGCAGGGCAAGAGCAGATGCTGACATTCCATCACCAGTCATGGACCTCCCTCAACTCCTCCAATCCTTTGAAAACCAAGGGCTCAATGCTAAAGACCTAGTGGCTTTATCAGGGGGACACTCCATAGGATTCGCCCAGTGTGGTCTCTTTAGGAATCGCATTTACGGAGACGATAATATCAACCCTAAATTTGCAAGCCAACGTCAAAAGACTTGTCCGCGTGAGGGAGGTGACTCGAACCTAGCCCCTCTCGATCAAACCGCGAGGCAGTTCGACAACAAATACTTCAGCAATTTGGTGGACAAAAAGGGACTTTTATTATCTGATCAGGCACTGTTTAGCGGTGGCGAGACAGATGAGTTTGTTAAGAGTTATAGCAAAAATACGGGGGATTTTTCAAAAGATTTTGCTAATTCTATGGTTAAGATGGGTAATATTAAGCCTTTGACTGGGTGGAATGGTCAAATTCGTGTGAATTGCAGGAGGGTGAATTAA

Network for GWHGAAZE005328

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00141.24	peroxidase	45	284	8.10E-78

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00430	E1.11.1.7	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0042744	biological_process	hydrogen peroxide catabolic process
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.900
	SRR3591706	second leaf	0.603
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	2.341
	SRR3591709	Stem	0.141
	SRR3591710	White floral bud	0.433
	SRR3591711	White flower	0.155
	SRR3591712	Green floral bud	2.803
	SRR3591713	Yellow flower	0.134
SRP173429	SRR8316895	Juvenile bud stage	2.427
	SRR8316896	Juvenile bud stage	5.051
	SRR8316897	Juvenile bud stage	0.964
	SRR8316894	Third green stage	0.591
	SRR8316900	Third green stage	3.940
	SRR8316901	Third green stage	4.585
	SRR8316898	Complete white stage	0.265
	SRR8316899	Complete white stage	3.826
	SRR8316903	Complete white stage	0.106
	SRR8316902	Silver flowering stage	0.190
	SRR8316904	Silver flowering stage	0.089
	SRR8316905	Silver flowering stage	0.238
	SRR8316906	Gold flowering stage	1.215
	SRR8316907	Gold flowering stage	0.612
	SRR8316908	Gold flowering stage	1.675
SRP132670	SRR6706286	Control	6.056
	SRR6706287	Light intensity 50%	6.192
	SRR6706288	Light intensity 20%	7.621
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.899
	CNS0095593	Slightly white alabastrum(diploid) 2	5.738
	CNS0095594	Slightly white alabastrum(diploid) 3	9.708
	CNS0095595	Whole white alabastrum(diploid) 2	7.777
	CNS0095596	Whole white alabastrum(diploid) 3	6.944
	CNS0095597	Whole white alabastrum(diploid) 4	5.508
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.088
	CNS0095600	Silvery flower (diploied) 3	0.042
	CNS0095601	Golden flower (diploid) 1	0.081
	CNS0095602	Golden flower (diploid) 2	0.003
	CNS0095603	Golden flower (diploid) 3	0.052
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.595
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.612
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.312
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.901
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.596
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.551
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	0.314
	CNS0095612	Silvery flower (diploied) 3	0.206
	CNS0095613	Golden flower (tetraploid) 1	1.214
	CNS0095614	Golden flower (tetraploid) 2	0.232
	CNS0095615	Golden flower (tetraploid) 3	0.317
CRA001975	CRR073297	Stem 1	3.686
	CRR073298	Stem 2	1.984
	CRR073299	Stem 3	1.901
	CRR073300	Leaf 1	4.981
	CRR073301	Leaf 2	3.511
	CRR073302	Leaf 3	9.190
	CRR073303	Juvenile bud 1	3.016
	CRR073304	Juvenile bud 2	3.343
	CRR073305	Juvenile bud 3	12.336
	CRR073306	Third green 1	0.789
	CRR073307	Third green 2	0.582
	CRR073308	Third green 3	2.827
	CRR073309	Second white 1	0.034
	CRR073310	Second white 2	0.692
	CRR073311	Second white 3	0.211
	CRR073312	Silver flowering 1	0.791
	CRR073313	Silver flowering 2	1.565
	CRR073314	Silver flowering 3	0.654
	CRR073315	Gold flowering 1	0.234
	CRR073316	Gold flowering 2	0.327
	CRR073317	Gold flowering 3	0.290
	CRR073318	Tawny withering 1	1.100
	CRR073319	Tawny withering 2	0.636
	CRR073320	Tawny withering 3	0.499