Gene detail

Detail information of GWHGAAZE005329

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010041557.1	3.244E-146	PREDICTED: cationic peroxidase 1-like [Eucalyptus grandis]
Swissprot	tr\|P22195\|PER1_ARAHY	4E-142	Cationic peroxidase 1 (Precursor)
trEMBL	tr\|A0A061EHM5\|A0A061EHM5_THECC	4E-146	Peroxidase superfamily protein {ECO:0000313\|EMBL:EOY04515.1}
TAIR10	AT5G05340.1	3E-88	Peroxidase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	6253994	6255233	-
GWHAAZE00000002	mRNA	6253994	6255233	-
GWHAAZE00000002	exon	6255042	6255233	-
GWHAAZE00000002	exon	6254570	6254735	-
GWHAAZE00000002	exon	6253994	6254379	-
GWHAAZE00000002	CDS	6255042	6255233	-
GWHAAZE00000002	CDS	6254570	6254735	-
GWHAAZE00000002	CDS	6253994	6254379	-

Transcript Sequence
>GWHTAAZE005335 GGGTGTGATGCATCAGTGCTGTTGGATGACACAGCAAACTTCACCGGAGAGCAAACAGCAGGCCCAAATAACGGTTCATTGAGAGGATTCGAGGTGATTGATACCATTAAATCTCAAGTGGAGAGTTTGTGCCCCGGTGTTGTTTCTTGCGCTGATATCTTGGCTGTAGCTGCCCGTGACTCTGTCGTCGCACTTGGCGGGCAGAGTTGGAATGTTCAACTGGGCAGAAGGGACTCAACAACAGCAAGTTTAAGTGCTGCTAACAGCAACATCCCCTCCCCTGCTTTGAATCTTAGTGGCCTTATAACTGCCTTCTCAAACAAAGGCTTCACTACCAATGAAATGGTGGCCCTCTCAGGGTCTCACACAATAGGGCAAGCTAGGTGCACGTCTTTTCGCACCCGAATCTATAACGAAGCCAACATAAATGCCTCATTTGCTACATCAGTGAGAGCAAACTGTCCTAATAGCGGAGGAGACAATAATCTATCCCCCCTTGACGCCGCTAGTCCTACATCATTCGATAACGCTTACTTCATTAATTTACAAAGCCAGAGCGGACTTCTTCACTCGGACCAACAACTATTCAACGGGGGTTCCACTGATTCCCAAGTTAACACCTACGCTTCCAACTCTGCTACTTTCTTGACGGATTTTGCTAATGCAATGGTGACAATGGGAAGCCTTAGCCCACTCACCGGCACCAGTGGTCAGATAAGGACCAATTGCGGGAGAACAAATTAA

Network for GWHGAAZE005329

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00141.24	peroxidase	1	211	6.70E-69

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00430	E1.11.1.7	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0042744	biological_process	hydrogen peroxide catabolic process
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.944
	SRR3591706	second leaf	0.015
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	9.520
	SRR3591710	White floral bud	0.756
	SRR3591711	White flower	1.327
	SRR3591712	Green floral bud	0.342
	SRR3591713	Yellow flower	0.521
SRP173429	SRR8316895	Juvenile bud stage	0.117
	SRR8316896	Juvenile bud stage	2.004
	SRR8316897	Juvenile bud stage	0.458
	SRR8316894	Third green stage	0.372
	SRR8316900	Third green stage	0.702
	SRR8316901	Third green stage	1.018
	SRR8316898	Complete white stage	0.584
	SRR8316899	Complete white stage	1.390
	SRR8316903	Complete white stage	1.102
	SRR8316902	Silver flowering stage	0.099
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.560
	SRR8316907	Gold flowering stage	0.164
	SRR8316908	Gold flowering stage	0.151
SRP132670	SRR6706286	Control	2.095
	SRR6706287	Light intensity 50%	0.981
	SRR6706288	Light intensity 20%	0.631
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.007
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.125
	CNS0095595	Whole white alabastrum(diploid) 2	0.175
	CNS0095596	Whole white alabastrum(diploid) 3	0.201
	CNS0095597	Whole white alabastrum(diploid) 4	0.338
	CNS0095598	Silvery flower (diploied) 1	0.326
	CNS0095599	Silvery flower (diploied) 2	0.186
	CNS0095600	Silvery flower (diploied) 3	0.338
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.925
	CNS0095603	Golden flower (diploid) 3	0.742
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.072
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.195
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.297
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	0.000
	CNS0095612	Silvery flower (diploied) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.314
	CNS0095614	Golden flower (tetraploid) 2	0.072
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.106
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.226
	CRR073301	Leaf 2	0.226
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.001
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.118
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.768
	CRR073318	Tawny withering 1	28.028
	CRR073319	Tawny withering 2	73.785
	CRR073320	Tawny withering 3	18.527