Gene detail

Detail information of GWHGAAZE005377

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002526668.1	1.7714E-125	ferritin, plant, putative [Ricinus communis]
Swissprot	tr\|Q948P6\|FRI3_SOYBN	4E-117	Ferritin-3, chloroplastic (Precursor)
trEMBL	tr\|B9SKZ9\|B9SKZ9_RICCO	7E-126	Ferritin {ECO:0000256\|RuleBase:RU361145}
TAIR10	AT2G40300.1	3E-71	ferritin 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	6895033	6898437	+
GWHAAZE00000002	mRNA	6895033	6898437	+
GWHAAZE00000002	exon	6895033	6895343	+
GWHAAZE00000002	exon	6896940	6897023	+
GWHAAZE00000002	exon	6897110	6897170	+
GWHAAZE00000002	exon	6897313	6897400	+
GWHAAZE00000002	exon	6897497	6897555	+
GWHAAZE00000002	exon	6897992	6898057	+
GWHAAZE00000002	exon	6898233	6898296	+
GWHAAZE00000002	exon	6898385	6898437	+
GWHAAZE00000002	CDS	6895033	6895343	+
GWHAAZE00000002	CDS	6896940	6897023	+
GWHAAZE00000002	CDS	6897110	6897170	+
GWHAAZE00000002	CDS	6897313	6897400	+
GWHAAZE00000002	CDS	6897497	6897555	+
GWHAAZE00000002	CDS	6897992	6898057	+
GWHAAZE00000002	CDS	6898233	6898296	+
GWHAAZE00000002	CDS	6898385	6898437	+

Transcript Sequence
>GWHTAAZE005383 ATGTTTGTGAAGGCAATTTCAGGTGTATCCGTGTGCGGCGCCATGGCCAAGGCCAAGGCCAAAGAAGGGTACCCTACTAGTAGTAGTGGTGTTGGAGCAATAACGTCTTCTTTTTCTTCTTCAATGGGAAGATCAAGGAGAGGAAATGCGGTGGAAGTTTCGGCTACGGGGGAAAATGGTAGTGGGGTGGTTTTTAAGCCATTTGAAGAGGTCAAGAAAGAGGAACTTGTGATACCAATTGCTCCTCATCTTTCACTTGCTCGTCACACCTTCTTAGATGACTGTGAAGCTGCTATTAATGAGCAAATCAATGTGGAATACAACGTCTCTTATGTGTATCTCGCCATGTACGCGTACTTCGACAGGGATAACATCGCTCTTAAAGGCCTTGCCAAATTTTTCAAGGAGTCAAGTGAAGAAGAAAGAGAACACGCGGAGAAACTGATGCAATATCAGAACATAAGAGGAGGAAAAGTGAAGCTACACTCTATAGTGATGCCGCCTTCAGAATTTGATCATGTGGAGAAGGGTGATGCATTGTATGCTATGGAAGTAGCATTGTCTATGGAGAAGTTGACAAATGAGAAACTTTTACCTTGCACAGTGGCTGATCGAAACAATGATCCTCAGATGGCAGATTTTATTGAGAGTGAATTTTTAAGTGAGCAGGTGGAAGCCATTAAAAAAATATCAGAATATGTAGCTCAATTGAGAAGGGTTGGAAAAGGACACGGTGTGTGGCACTTCGATCAGATGCTTCTTCACAAGGGAAACCCTGCAGTTTGA

Network for GWHGAAZE005377

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00210.25	Ferritin	97	240	2.00E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00522	FTH1	Ferroptosis	map04216
		Necroptosis	map04217
		Mineral absorption	map04978

Gene Ontology

GO term	Ontology	Name
GO:0006879	biological_process	cellular iron ion homeostasis
GO:0008199	molecular_function	ferric iron binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.155
	SRR3591706	second leaf	8.898
	SRR3591707	mature leaf	9.258
	SRR3591708	Shoot apex	6.222
	SRR3591709	Stem	2.094
	SRR3591710	White floral bud	69.255
	SRR3591711	White flower	9.318
	SRR3591712	Green floral bud	4.582
	SRR3591713	Yellow flower	3.077
SRP173429	SRR8316895	Juvenile bud stage	0.959
	SRR8316896	Juvenile bud stage	2.494
	SRR8316897	Juvenile bud stage	1.404
	SRR8316894	Third green stage	1.153
	SRR8316900	Third green stage	1.247
	SRR8316901	Third green stage	2.990
	SRR8316898	Complete white stage	4.061
	SRR8316899	Complete white stage	6.221
	SRR8316903	Complete white stage	10.485
	SRR8316902	Silver flowering stage	11.761
	SRR8316904	Silver flowering stage	25.413
	SRR8316905	Silver flowering stage	8.371
	SRR8316906	Gold flowering stage	15.811
	SRR8316907	Gold flowering stage	32.583
	SRR8316908	Gold flowering stage	52.160
SRP132670	SRR6706286	Control	1.852
	SRR6706287	Light intensity 50%	7.740
	SRR6706288	Light intensity 20%	2.847
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.870
	CNS0095593	Slightly white alabastrum(diploid) 2	1.166
	CNS0095594	Slightly white alabastrum(diploid) 3	1.596
	CNS0095595	Whole white alabastrum(diploid) 2	2.156
	CNS0095596	Whole white alabastrum(diploid) 3	2.900
	CNS0095597	Whole white alabastrum(diploid) 4	2.458
	CNS0095598	Silvery flower (diploied) 1	6.355
	CNS0095599	Silvery flower (diploied) 2	18.467
	CNS0095600	Silvery flower (diploied) 3	34.615
	CNS0095601	Golden flower (diploid) 1	17.182
	CNS0095602	Golden flower (diploid) 2	38.349
	CNS0095603	Golden flower (diploid) 3	39.018
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.005
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.271
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.236
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.774
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.676
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.092
	CNS0095610	Silvery flower (diploied) 1	32.333
	CNS0095611	Silvery flower (diploied) 2	28.121
	CNS0095612	Silvery flower (diploied) 3	42.224
	CNS0095613	Golden flower (tetraploid) 1	21.147
	CNS0095614	Golden flower (tetraploid) 2	42.181
	CNS0095615	Golden flower (tetraploid) 3	11.047
CRA001975	CRR073297	Stem 1	1.001
	CRR073298	Stem 2	0.538
	CRR073299	Stem 3	0.338
	CRR073300	Leaf 1	3.000
	CRR073301	Leaf 2	2.161
	CRR073302	Leaf 3	0.666
	CRR073303	Juvenile bud 1	2.762
	CRR073304	Juvenile bud 2	12.931
	CRR073305	Juvenile bud 3	1.832
	CRR073306	Third green 1	3.725
	CRR073307	Third green 2	5.152
	CRR073308	Third green 3	3.051
	CRR073309	Second white 1	4.003
	CRR073310	Second white 2	4.864
	CRR073311	Second white 3	5.372
	CRR073312	Silver flowering 1	5.476
	CRR073313	Silver flowering 2	5.422
	CRR073314	Silver flowering 3	6.544
	CRR073315	Gold flowering 1	0.976
	CRR073316	Gold flowering 2	4.021
	CRR073317	Gold flowering 3	1.857
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.052
	CRR073320	Tawny withering 3	0.212