Detail information of GWHGAAZE005401


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010264622.11.5168E-102PREDICTED: trihelix transcription factor GT-3b-like [Nelumbo nucifera]
Swissprottr|Q9SDW0|TGT3A_ARATH7E-52Trihelix transcription factor GT-3a
trEMBLtr|F6H6T6|F6H6T6_VITVI1E-94Putative uncharacterized protein {ECO:0000313|EMBL:CCB47922.1}
TAIR10AT2G38250.16E-43Homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene73611907362442-
GWHAAZE00000002mRNA73611907362442-
GWHAAZE00000002exon73611907361432-
GWHAAZE00000002exon73615857361725-
GWHAAZE00000002exon73621767362442-
GWHAAZE00000002CDS73621767362442-
GWHAAZE00000002CDS73615857361725-
GWHAAZE00000002CDS73611907361432-
Transcript Sequence

Network for GWHGAAZE005401

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13837.7Myb_DNA-bind_4281121.40E-19
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyTrihelix

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.216
SRR3591706second leaf0.935
SRR3591707mature leaf0.517
SRR3591708Shoot apex3.134
SRR3591709Stem28.418
SRR3591710White floral bud12.317
SRR3591711White flower11.761
SRR3591712Green floral bud9.751
SRR3591713Yellow flower13.408
SRP173429 SRR8316895Juvenile bud stage 7.000
SRR8316896Juvenile bud stage 5.819
SRR8316897Juvenile bud stage 6.195
SRR8316894Third green stage 1.436
SRR8316900Third green stage 5.630
SRR8316901Third green stage 8.079
SRR8316898Complete white stage 2.458
SRR8316899Complete white stage 10.664
SRR8316903Complete white stage 2.594
SRR8316902Silver flowering stage2.967
SRR8316904Silver flowering stage3.064
SRR8316905Silver flowering stage1.403
SRR8316906Gold flowering stage 5.603
SRR8316907Gold flowering stage 3.095
SRR8316908Gold flowering stage 13.676
SRP132670SRR6706286Control5.762
SRR6706287Light intensity 50%7.332
SRR6706288Light intensity 20%6.969
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.436
CNS0095593Slightly white alabastrum(diploid) 223.750
CNS0095594Slightly white alabastrum(diploid) 318.508
CNS0095595Whole white alabastrum(diploid) 213.730
CNS0095596Whole white alabastrum(diploid) 36.149
CNS0095597Whole white alabastrum(diploid) 411.210
CNS0095598Silvery flower (diploied) 117.095
CNS0095599Silvery flower (diploied) 225.982
CNS0095600Silvery flower (diploied) 39.353
CNS0095601Golden flower (diploid) 112.112
CNS0095602Golden flower (diploid) 210.577
CNS0095603Golden flower (diploid) 311.480
CNS0095604Slightly white alabastrum(tetraploid) 11.192
CNS0095605Slightly white alabastrum(tetraploid) 21.025
CNS0095606Slightly white alabastrum(tetraploid) 32.309
CNS0095607Whole white alabastrum(tetraploid) 12.538
CNS0095608Whole white alabastrum(tetraploid) 24.493
CNS0095609Whole white alabastrum(tetraploid) 31.163
CNS0095610Silvery flower (diploied) 12.211
CNS0095611Silvery flower (diploied) 21.202
CNS0095612Silvery flower (diploied) 31.720
CNS0095613Golden flower (tetraploid) 14.559
CNS0095614Golden flower (tetraploid) 22.983
CNS0095615Golden flower (tetraploid) 31.144
CRA001975CRR073297Stem 17.142
CRR073298Stem 26.324
CRR073299Stem 35.122
CRR073300Leaf 113.217
CRR073301Leaf 223.400
CRR073302Leaf 311.178
CRR073303Juvenile bud 116.982
CRR073304Juvenile bud 214.148
CRR073305Juvenile bud 322.497
CRR073306Third green 16.594
CRR073307Third green 27.142
CRR073308Third green 35.704
CRR073309Second white 12.680
CRR073310Second white 27.503
CRR073311Second white 31.025
CRR073312Silver flowering 19.247
CRR073313Silver flowering 28.333
CRR073314Silver flowering 34.805
CRR073315Gold flowering 13.896
CRR073316Gold flowering 24.606
CRR073317Gold flowering 32.880
CRR073318Tawny withering 120.754
CRR073319Tawny withering 238.036
CRR073320Tawny withering 319.102