Gene detail

Detail information of GWHGAAZE005414

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009795072.1	4.5554E-128	PREDICTED: dehydrodolichyl diphosphate synthase 2-like [Nicotiana sylvestris]
Swissprot	tr\|Q56Y11\|DDPS2_ARATH	9E-114	Dehydrodolichyl diphosphate synthase 2
trEMBL	tr\|V4SZC6\|V4SZC6_9ROSI	3E-125	Uncharacterized protein {ECO:0000313\|EMBL:ESR42606.1}
TAIR10	AT5G58770.1	8E-92	Undecaprenyl pyrophosphate synthetase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	7597608	7599122	+
GWHAAZE00000002	mRNA	7597608	7599122	+
GWHAAZE00000002	exon	7597608	7598042	+
GWHAAZE00000002	exon	7598154	7598221	+
GWHAAZE00000002	exon	7598684	7599122	+
GWHAAZE00000002	CDS	7597608	7598042	+
GWHAAZE00000002	CDS	7598154	7598221	+
GWHAAZE00000002	CDS	7598684	7599122	+

Transcript Sequence
>GWHTAAZE005420 ATGCTATCTATCTCATTATCATCCCTTCTCCCCAATACTCTAAACCCTCTTCTTTTTCTACCCAACCCCAGTTCTCCATCCTCCCCGATTCACATTTCCATATCCACTCCGCACCATCTCTCCCCTCCTCCACTTCGTGTATCCACGAAAGATGCTGCTGTCTTCGAACCACCAAACGATTTCGTTGTAGACGCCGGTGCAACGGAAGATGAAGATCCGTTGCCAGCAGGTCTACTCCGGGAGTTGATGCCAAACCACGTGGCGGTGGTCATGGACGGGAACCGGAGGTGGGCCAGGATGAGAGGGTTGCAGGCCGTATCGGGTTACAAAGCGGGGGTTGGGGCCCTCAAAGGTATGATGGGGCTATGTTGCAAGTGGGGAATTAAGGTTCTCACTGTCTTCGCATTCTCATCTGAAAACTGGTTTCGACCTCGAGTGGAAGTTGATTTCTTGATTAATTTGTTTGAAAGAGGATTGAGAGATGAACTTGATGAATTTGTGAGGGAGGATATTCGAATCTCTGTAATTGGGAATCCCGCTAAACTCCCAGAGTCCCTACAAGAACTGATAACTAATGTAGAGGAAGCCACTAAGAACAATTCTAGGCTTCATCTTGTTGTTGCAGTTAGCTATAGTGGGAAGTACGACATTGTACAAGCCTGCCAAAGCATTGCTCTGAAAGTAAAAGACGGTGTTATCGAACCTCAGAACATCAATGAGTTTCTAATCGAGCAGGAGCTGGAAACAAACTGTACCCAATTCCCATACCCTGATCTTCTTATACGGACTAGTGGTGAGCTTAGAGTGAGCAACTTCTTGTTGTGGCAATTAGCCTATACTGAGCTCTTCTTTTCAAAATCGCATTGGCCCGATTTTAGAGAAGCTGAGTTTTTAGAGGCTTTATGTTCCTTTCAGCGAAGGCAGAGGAGCTATGGGGGATGA

Network for GWHGAAZE005414

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01255.20	Prenyltransf	90	312	1.10E-72

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11778	DHDDS, RER2, SRT1	Biosynthesis of secondary metabolites	map01110
K11778	DHDDS, RER2, SRT1	Terpenoid backbone biosynthesis	map00900

Gene Ontology

GO term	Ontology	Name
GO:0016765	molecular_function	transferase activity, transferring alkyl or aryl (other than methyl) groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.591
	SRR3591706	second leaf	31.668
	SRR3591707	mature leaf	31.027
	SRR3591708	Shoot apex	19.196
	SRR3591709	Stem	6.801
	SRR3591710	White floral bud	1.861
	SRR3591711	White flower	3.575
	SRR3591712	Green floral bud	2.831
	SRR3591713	Yellow flower	0.764
SRP173429	SRR8316895	Juvenile bud stage	3.539
	SRR8316896	Juvenile bud stage	5.137
	SRR8316897	Juvenile bud stage	1.423
	SRR8316894	Third green stage	2.190
	SRR8316900	Third green stage	6.237
	SRR8316901	Third green stage	4.954
	SRR8316898	Complete white stage	2.170
	SRR8316899	Complete white stage	8.392
	SRR8316903	Complete white stage	3.761
	SRR8316902	Silver flowering stage	1.278
	SRR8316904	Silver flowering stage	1.772
	SRR8316905	Silver flowering stage	0.908
	SRR8316906	Gold flowering stage	2.320
	SRR8316907	Gold flowering stage	1.324
	SRR8316908	Gold flowering stage	1.057
SRP132670	SRR6706286	Control	3.132
	SRR6706287	Light intensity 50%	2.727
	SRR6706288	Light intensity 20%	3.355
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.009
	CNS0095593	Slightly white alabastrum(diploid) 2	3.544
	CNS0095594	Slightly white alabastrum(diploid) 3	2.197
	CNS0095595	Whole white alabastrum(diploid) 2	3.544
	CNS0095596	Whole white alabastrum(diploid) 3	2.095
	CNS0095597	Whole white alabastrum(diploid) 4	1.621
	CNS0095598	Silvery flower (diploied) 1	9.510
	CNS0095599	Silvery flower (diploied) 2	2.991
	CNS0095600	Silvery flower (diploied) 3	3.364
	CNS0095601	Golden flower (diploid) 1	6.930
	CNS0095602	Golden flower (diploid) 2	4.119
	CNS0095603	Golden flower (diploid) 3	5.062
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.370
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.386
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.377
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.907
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.051
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.966
	CNS0095610	Silvery flower (diploied) 1	1.627
	CNS0095611	Silvery flower (diploied) 2	4.159
	CNS0095612	Silvery flower (diploied) 3	1.749
	CNS0095613	Golden flower (tetraploid) 1	0.756
	CNS0095614	Golden flower (tetraploid) 2	1.370
	CNS0095615	Golden flower (tetraploid) 3	0.994
CRA001975	CRR073297	Stem 1	12.504
	CRR073298	Stem 2	10.715
	CRR073299	Stem 3	11.850
	CRR073300	Leaf 1	5.670
	CRR073301	Leaf 2	5.342
	CRR073302	Leaf 3	4.246
	CRR073303	Juvenile bud 1	4.582
	CRR073304	Juvenile bud 2	3.129
	CRR073305	Juvenile bud 3	3.220
	CRR073306	Third green 1	0.643
	CRR073307	Third green 2	0.653
	CRR073308	Third green 3	0.737
	CRR073309	Second white 1	1.595
	CRR073310	Second white 2	1.209
	CRR073311	Second white 3	0.294
	CRR073312	Silver flowering 1	0.641
	CRR073313	Silver flowering 2	0.192
	CRR073314	Silver flowering 3	0.619
	CRR073315	Gold flowering 1	29.121
	CRR073316	Gold flowering 2	38.973
	CRR073317	Gold flowering 3	34.753
	CRR073318	Tawny withering 1	7.436
	CRR073319	Tawny withering 2	4.845
	CRR073320	Tawny withering 3	7.636