Detail information of GWHGAAZE005519


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011096194.16.6865E-161PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Sesamum indicum]
Swissprottr|P51132|UCRI2_TOBAC8E-152Cytochrome b-c1 complex subunit Rieske-2, mitochondrial (Precursor)
trEMBLtr|A0A022QII7|A0A022QII7_ERYGU1E-156Cytochrome b-c1 complex subunit Rieske, mitochondrial {ECO:0000256|RuleBase:RU004494}
TAIR10AT5G13430.11E-109Ubiquinol-cytochrome C reductase iron-sulfur subunit

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene92835519286316-
GWHAAZE00000002mRNA92835519286316-
GWHAAZE00000002exon92835519284191-
GWHAAZE00000002exon92861339286316-
GWHAAZE00000002CDS92861339286316-
GWHAAZE00000002CDS92835519284191-
Transcript Sequence

Network for GWHGAAZE005519

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0160GO:0009331 glycerol-3-phosphate dehydrogenase complex GOslim:cellular_component
GO:0004368 glycerol-3-phosphate dehydrogenase (quinone) activity GOslim:molecular_function
GO:0006072 glycerol-3-phosphate metabolic process GOslim:biological_process
map01200 Carbon metabolism
map04260 Cardiac muscle contraction
map01110 Biosynthesis of secondary metabolites
map01120 Microbial metabolism in diverse environments
map00190 Oxidative phosphorylation
map01100 Metabolic pathways
map04714 Thermogenesis
GO:0006096 glycolytic process GOslim:biological_process
map01230 Biosynthesis of amino acids
map00020 Citrate cycle
map02020 Two-component system
map00564 Glycerophospholipid metabolism
GO:0055114 oxidation-reduction process GOslim:biological_process
map00010 Glycolysis / Gluconeogenesis
GO:0006099 tricarboxylic acid cycle GOslim:biological_process
GO:0008121 ubiquinol-cytochrome-c reductase activity GOslim:molecular_function
GO:0004449 isocitrate dehydrogenase (NAD+) activity GOslim:molecular_function
GO:0000287 magnesium ion binding GOslim:molecular_function
GO:0015986 ATP synthesis coupled proton transport GOslim:biological_process
GO:0004332 fructose-bisphosphate aldolase activity GOslim:molecular_function
GO:0048037 cofactor binding GOslim:molecular_function
GO:0003824 catalytic activity GOslim:molecular_function
GO:0004743 pyruvate kinase activity GOslim:molecular_function
GO:0030955 potassium ion binding GOslim:molecular_function


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02921.15UCR_TM891456.60E-13
PF00355.27Rieske1572604.80E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00411UQCRFS1, RIP1, petA Metabolic pathways map01100
Oxidative phosphorylationmap00190
Two-component systemmap02020
Cardiac muscle contractionmap04260
Thermogenesismap04714

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0016020cellular_componentmembrane
GO:0008121molecular_functionubiquinol-cytochrome-c reductase activity
GO:0016491molecular_functionoxidoreductase activity
GO:0051537molecular_function2 iron, 2 sulfur cluster binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf289.636
SRR3591706second leaf159.136
SRR3591707mature leaf95.227
SRR3591708Shoot apex213.870
SRR3591709Stem212.417
SRR3591710White floral bud458.003
SRR3591711White flower513.631
SRR3591712Green floral bud416.739
SRR3591713Yellow flower415.809
SRP173429 SRR8316895Juvenile bud stage 196.007
SRR8316896Juvenile bud stage 300.767
SRR8316897Juvenile bud stage 155.365
SRR8316894Third green stage 127.124
SRR8316900Third green stage 508.068
SRR8316901Third green stage 472.716
SRR8316898Complete white stage 278.066
SRR8316899Complete white stage 441.470
SRR8316903Complete white stage 354.531
SRR8316902Silver flowering stage357.676
SRR8316904Silver flowering stage365.759
SRR8316905Silver flowering stage215.045
SRR8316906Gold flowering stage 807.712
SRR8316907Gold flowering stage 927.422
SRR8316908Gold flowering stage 926.407
SRP132670SRR6706286Control558.117
SRR6706287Light intensity 50%583.108
SRR6706288Light intensity 20%600.799
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1244.622
CNS0095593Slightly white alabastrum(diploid) 2292.535
CNS0095594Slightly white alabastrum(diploid) 3240.168
CNS0095595Whole white alabastrum(diploid) 2272.776
CNS0095596Whole white alabastrum(diploid) 3288.282
CNS0095597Whole white alabastrum(diploid) 4255.910
CNS0095598Silvery flower (diploied) 1197.652
CNS0095599Silvery flower (diploied) 2208.547
CNS0095600Silvery flower (diploied) 3513.131
CNS0095601Golden flower (diploid) 1188.032
CNS0095602Golden flower (diploid) 2394.625
CNS0095603Golden flower (diploid) 3399.686
CNS0095604Slightly white alabastrum(tetraploid) 1326.165
CNS0095605Slightly white alabastrum(tetraploid) 2281.126
CNS0095606Slightly white alabastrum(tetraploid) 3334.561
CNS0095607Whole white alabastrum(tetraploid) 1307.865
CNS0095608Whole white alabastrum(tetraploid) 2342.001
CNS0095609Whole white alabastrum(tetraploid) 3427.377
CNS0095610Silvery flower (diploied) 1588.519
CNS0095611Silvery flower (diploied) 2511.888
CNS0095612Silvery flower (diploied) 3671.057
CNS0095613Golden flower (tetraploid) 1408.244
CNS0095614Golden flower (tetraploid) 2385.722
CNS0095615Golden flower (tetraploid) 3569.956
CRA001975CRR073297Stem 1384.669
CRR073298Stem 2386.275
CRR073299Stem 3497.501
CRR073300Leaf 1522.471
CRR073301Leaf 2565.542
CRR073302Leaf 3773.830
CRR073303Juvenile bud 1744.029
CRR073304Juvenile bud 21013.411
CRR073305Juvenile bud 3739.331
CRR073306Third green 11340.979
CRR073307Third green 21291.551
CRR073308Third green 3996.439
CRR073309Second white 11886.727
CRR073310Second white 21050.870
CRR073311Second white 3837.584
CRR073312Silver flowering 11033.416
CRR073313Silver flowering 21435.829
CRR073314Silver flowering 31039.034
CRR073315Gold flowering 1211.838
CRR073316Gold flowering 2204.362
CRR073317Gold flowering 3251.376
CRR073318Tawny withering 1388.138
CRR073319Tawny withering 2349.182
CRR073320Tawny withering 3322.732