Gene detail

Detail information of GWHGAAZE005529

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011019860.1	0	PREDICTED: transcription factor AS1 [Populus euphratica]
Swissprot	tr\|O80931\|AS1_ARATH	2E-166	Transcription factor AS1
trEMBL	tr\|A0A061ER46\|A0A061ER46_THECC	0	Myb-like HTH transcriptional regulator family protein isoform 1 {ECO:0000313\|EMBL:EOY07520.1}
TAIR10	AT2G37630.1	1E-121	myb-like HTH transcriptional regulator family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	9454109	9455197	+
GWHAAZE00000002	mRNA	9454109	9455197	+
GWHAAZE00000002	exon	9454109	9455197	+
GWHAAZE00000002	CDS	9454109	9455197	+

Transcript Sequence
>GWHTAAZE005537 ATGAAGGAGAGGCAGCGGTGGCGAGCTGAAGAGGATGCTCTACTACGTTCATATGTCAAACAGTATGGCCCAAGAGAGTGGCACCTGGTCTCCCAGCGCATGAACACCCCCTTAAACCGAGACGCCAAATCCTGTTTGGAAAGGTGGAAAAACTACCTAAAACCCGGCATTAAAAAAGGATCCCTCACCGAAGAAGAGCAGCGCCTCGTAATCCGTCTTCAAGCCAAACACGGCAATAAATGGAAAAAAATTGCTGCTGAAGTCCCTGGCCGAACCGCCAAACGACTTGGAAAGTGGTGGGAAGTTTTTAAAGAAAAGCAGCAGAGAGAGCAAAAGGAAACCAATAAAGCAGTGGACCCGATTGAGGATGGAAAGTATGATCAAATTTTAGAGACGTTCGCGGAGAAATTGGTCAAAGAACGTTCTCCCCCAGCAATCTTCATGGCCACCTCAAACGGTGCGTTCCTCAACCACACGGACCCACCTCCCCCTTCCCCACCAAATATGCTTCCACCATGGCTTTCTAACACCAGTGCTGCCTCAACAGTTAGGCCACCCTCCCCTTCGGTCACCCTTAGCCTCTCGTCCACAACAGTGCCGCCTTCACCCACAATCCCGTGGTTACAATCTGAGCGGGGTCCCACTAACCCCCCTTATCTCGTGGGTCACTTGCCATCTCATGGGGCAGCGGTGGCGGCAGCAGCGCATGGAGAGAGCCTTATGATATCTGAACTTGTAGATTGCTGTAGAGAGCTAGAAGAAGGGCACCGCGCTTGGGCGGCCCACAAGAAAGAAGCAGCGTGGAGGCTGAGGAGGGTGGAACTTCAACTGGAATCGGAGAAGGCGTGTAGGAGGAGAGAGAAGATGGATGAGATAGAGGCGAAAGTGAAAGCACTACGGGAGGAGCAGAAGACTACACTGGAGCGGATTGAAGCTGAGTATAGGGAACAGTTGGCTGGATTGAGGAGGGATGCAGAAACCAAGGAGCAGAAATTGGCGGAGCAGTGGGCCGCAAAGCATTTGCGTATTACCAAGTTTCTTGAACAGATGGGATGCCGTCAAAGACTTCCAGAGCCTAATGGGAGGTAA

Network for GWHGAAZE005529

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0251	GO:0008081 phosphoric diester hydrolase activity GOslim:molecular_function GO:0006629 lipid metabolic process GOslim:biological_process Transcription factor MYB family Transcription factor MYB

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13921.7	Myb_DNA-bind_6	7	68	3.20E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	31.856
	SRR3591706	second leaf	84.598
	SRR3591707	mature leaf	33.742
	SRR3591708	Shoot apex	151.134
	SRR3591709	Stem	18.004
	SRR3591710	White floral bud	40.732
	SRR3591711	White flower	32.204
	SRR3591712	Green floral bud	61.775
	SRR3591713	Yellow flower	4.095
SRP173429	SRR8316895	Juvenile bud stage	43.522
	SRR8316896	Juvenile bud stage	48.548
	SRR8316897	Juvenile bud stage	20.436
	SRR8316894	Third green stage	16.762
	SRR8316900	Third green stage	46.876
	SRR8316901	Third green stage	42.152
	SRR8316898	Complete white stage	5.777
	SRR8316899	Complete white stage	65.220
	SRR8316903	Complete white stage	8.602
	SRR8316902	Silver flowering stage	2.308
	SRR8316904	Silver flowering stage	2.322
	SRR8316905	Silver flowering stage	0.990
	SRR8316906	Gold flowering stage	3.502
	SRR8316907	Gold flowering stage	3.714
	SRR8316908	Gold flowering stage	6.244
SRP132670	SRR6706286	Control	63.550
	SRR6706287	Light intensity 50%	57.802
	SRR6706288	Light intensity 20%	57.100
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	34.288
	CNS0095593	Slightly white alabastrum(diploid) 2	38.837
	CNS0095594	Slightly white alabastrum(diploid) 3	33.892
	CNS0095595	Whole white alabastrum(diploid) 2	35.057
	CNS0095596	Whole white alabastrum(diploid) 3	25.276
	CNS0095597	Whole white alabastrum(diploid) 4	24.584
	CNS0095598	Silvery flower (diploied) 1	64.420
	CNS0095599	Silvery flower (diploied) 2	45.155
	CNS0095600	Silvery flower (diploied) 3	13.619
	CNS0095601	Golden flower (diploid) 1	60.480
	CNS0095602	Golden flower (diploid) 2	24.078
	CNS0095603	Golden flower (diploid) 3	24.917
	CNS0095604	Slightly white alabastrum(tetraploid) 1	56.609
	CNS0095605	Slightly white alabastrum(tetraploid) 2	48.857
	CNS0095606	Slightly white alabastrum(tetraploid) 3	101.582
	CNS0095607	Whole white alabastrum(tetraploid) 1	48.889
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.986
	CNS0095609	Whole white alabastrum(tetraploid) 3	42.055
	CNS0095610	Silvery flower (diploied) 1	9.386
	CNS0095611	Silvery flower (diploied) 2	25.294
	CNS0095612	Silvery flower (diploied) 3	16.160
	CNS0095613	Golden flower (tetraploid) 1	4.835
	CNS0095614	Golden flower (tetraploid) 2	7.995
	CNS0095615	Golden flower (tetraploid) 3	0.740
CRA001975	CRR073297	Stem 1	69.129
	CRR073298	Stem 2	70.832
	CRR073299	Stem 3	86.328
	CRR073300	Leaf 1	57.757
	CRR073301	Leaf 2	62.632
	CRR073302	Leaf 3	44.035
	CRR073303	Juvenile bud 1	43.143
	CRR073304	Juvenile bud 2	33.479
	CRR073305	Juvenile bud 3	64.359
	CRR073306	Third green 1	4.075
	CRR073307	Third green 2	3.419
	CRR073308	Third green 3	7.641
	CRR073309	Second white 1	1.282
	CRR073310	Second white 2	1.897
	CRR073311	Second white 3	0.825
	CRR073312	Silver flowering 1	0.458
	CRR073313	Silver flowering 2	0.540
	CRR073314	Silver flowering 3	1.259
	CRR073315	Gold flowering 1	19.950
	CRR073316	Gold flowering 2	22.666
	CRR073317	Gold flowering 3	22.580
	CRR073318	Tawny withering 1	21.036
	CRR073319	Tawny withering 2	10.273
	CRR073320	Tawny withering 3	20.746