Detail information of GWHGAAZE005564


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011094817.15.3335E-153PREDICTED: ras-related protein RABE1c [Sesamum indicum]
Swissprottr|O24466|RAE1A_ARATH2E-140Ras-related protein RABE1a
trEMBLtr|Q41024|Q41024_PEA7E-151Small GTP-binding protein {ECO:0000313|EMBL:CAA90080.1}
TAIR10AT5G59840.13E-98Ras-related small GTP-binding family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1001806910021915+
GWHAAZE00000002mRNA1001806910021915+
GWHAAZE00000002exon1001806910018141+
GWHAAZE00000002exon1001915910019231+
GWHAAZE00000002exon1001932310019423+
GWHAAZE00000002exon1002011510020180+
GWHAAZE00000002exon1002046110020558+
GWHAAZE00000002exon1002115610021218+
GWHAAZE00000002exon1002130510021397+
GWHAAZE00000002exon1002183210021915+
GWHAAZE00000002CDS1001806910018141+
GWHAAZE00000002CDS1001915910019231+
GWHAAZE00000002CDS1001932310019423+
GWHAAZE00000002CDS1002011510020180+
GWHAAZE00000002CDS1002046110020558+
GWHAAZE00000002CDS1002115610021218+
GWHAAZE00000002CDS1002130510021397+
GWHAAZE00000002CDS1002183210021915+
Transcript Sequence

Network for GWHGAAZE005564

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00071.23Ras171781.10E-66
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07901RAB8A, MEL AMPK signaling pathway map04152
Endocytosismap04144
Autophagy - animalmap04140
Tight junctionmap04530
Pancreatic secretionmap04972

Gene Ontology

GO term OntologyName
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf23.189
SRR3591706second leaf9.932
SRR3591707mature leaf7.972
SRR3591708Shoot apex24.919
SRR3591709Stem22.242
SRR3591710White floral bud23.352
SRR3591711White flower19.405
SRR3591712Green floral bud22.068
SRR3591713Yellow flower20.675
SRP173429 SRR8316895Juvenile bud stage 17.710
SRR8316896Juvenile bud stage 31.414
SRR8316897Juvenile bud stage 14.514
SRR8316894Third green stage 11.360
SRR8316900Third green stage 29.507
SRR8316901Third green stage 30.385
SRR8316898Complete white stage 8.553
SRR8316899Complete white stage 24.382
SRR8316903Complete white stage 15.753
SRR8316902Silver flowering stage8.285
SRR8316904Silver flowering stage11.348
SRR8316905Silver flowering stage6.035
SRR8316906Gold flowering stage 15.516
SRR8316907Gold flowering stage 14.248
SRR8316908Gold flowering stage 12.753
SRP132670SRR6706286Control23.947
SRR6706287Light intensity 50%23.350
SRR6706288Light intensity 20%23.962
CNP0000432CNS0095592Slightly white alabastrum(diploid) 136.800
CNS0095593Slightly white alabastrum(diploid) 228.831
CNS0095594Slightly white alabastrum(diploid) 341.320
CNS0095595Whole white alabastrum(diploid) 228.275
CNS0095596Whole white alabastrum(diploid) 330.187
CNS0095597Whole white alabastrum(diploid) 425.869
CNS0095598Silvery flower (diploied) 120.801
CNS0095599Silvery flower (diploied) 217.484
CNS0095600Silvery flower (diploied) 313.813
CNS0095601Golden flower (diploid) 112.619
CNS0095602Golden flower (diploid) 214.210
CNS0095603Golden flower (diploid) 311.737
CNS0095604Slightly white alabastrum(tetraploid) 128.429
CNS0095605Slightly white alabastrum(tetraploid) 227.468
CNS0095606Slightly white alabastrum(tetraploid) 322.882
CNS0095607Whole white alabastrum(tetraploid) 127.301
CNS0095608Whole white alabastrum(tetraploid) 225.421
CNS0095609Whole white alabastrum(tetraploid) 323.024
CNS0095610Silvery flower (diploied) 114.218
CNS0095611Silvery flower (diploied) 214.435
CNS0095612Silvery flower (diploied) 314.525
CNS0095613Golden flower (tetraploid) 116.901
CNS0095614Golden flower (tetraploid) 215.345
CNS0095615Golden flower (tetraploid) 312.675
CRA001975CRR073297Stem 124.741
CRR073298Stem 221.313
CRR073299Stem 317.129
CRR073300Leaf 120.715
CRR073301Leaf 218.604
CRR073302Leaf 321.971
CRR073303Juvenile bud 117.735
CRR073304Juvenile bud 214.967
CRR073305Juvenile bud 315.749
CRR073306Third green 17.042
CRR073307Third green 211.677
CRR073308Third green 39.499
CRR073309Second white 16.673
CRR073310Second white 26.353
CRR073311Second white 35.765
CRR073312Silver flowering 14.802
CRR073313Silver flowering 27.449
CRR073314Silver flowering 36.221
CRR073315Gold flowering 19.083
CRR073316Gold flowering 29.194
CRR073317Gold flowering 39.091
CRR073318Tawny withering 121.225
CRR073319Tawny withering 225.430
CRR073320Tawny withering 322.303