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Detail information of GWHGAAZE005638
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
XP_004143253.1
1.95435E-86
PREDICTED: CASP-like protein 2-like [Cucumis sativus]
Swissprot
tr|P0DI70|CSPL2_GINBI
3E-74
CASP-like protein 5A1
trEMBL
tr|A0A0A0KF35|A0A0A0KF35_CUCSA
7E-87
Uncharacterized protein {ECO:0000313|EMBL:KGN48158.1}
TAIR10
AT2G28370.1
2E-59
Uncharacterised protein family (UPF0497)
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000002
gene
11209949
11213512
-
GWHAAZE00000002
mRNA
11209949
11213512
-
GWHAAZE00000002
exon
11213298
11213512
-
GWHAAZE00000002
exon
11210442
11210574
-
GWHAAZE00000002
exon
11209949
11210176
-
GWHAAZE00000002
CDS
11213298
11213512
-
GWHAAZE00000002
CDS
11210442
11210574
-
GWHAAZE00000002
CDS
11209949
11210176
-
Transcript Sequence
>GWHTAAZE005646 ATGAGCGTAAGCCGCCCATCGGTACATCCGGTGGATGCTCCGCCGATGACCGACGGAGCTAACGTTGCCCCGCCCAGAGTGAGGATGAAGGATATCCCTGGCATGCCTGGTACCGCCGTTGGTTCTGCCCTACGTCTCTTCCAGTTCCTTTTTGCTCTTATCTCTCTCTCTGTTATGCTCACTACCACTGATTTCCCTACTGTCACCGCCTTCAGCTACCTTGTTGCAGCCGTTGGCTTGCAAACTTTGTGGAGCTTGGCACTAGCTGTCATTGATATATATGCACTTTTGGTAAGACGAAGCTTACGGAATCCAAGAGTTATGAGCTTGTTCACCATTGGTGATGGGCAGCAAGATAACACGTTAGATAATTTCCTGGTGCAGATTACATCTACGCTTACATATGCGGCTGCATGTGCATCTGCTGGCATCACAGTGCTTATAAGCAACGACCTTGATAAATGTAACGTCAACCATTGCAAGAGGTTTATGTCAGCTACAGCTATGGCTTTCATAAGCTGGTTTGCCACTCTTCCTTCCTTTTTCTTGAATTTCTGGTCGCTGGCTTCGCATTAA
Network for GWHGAAZE005638
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
CFinderModule0025
GO:0015914 phospholipid transport GOslim:biological_process
GO:0140326 ATPase-coupled intramembrane lipid transporter activity GOslim:molecular_function
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF04535.13
DUF588
36
176
2.50E-18
Protein Sequence
>GWHPAAZE005642 MSVSRPSVHPVDAPPMTDGANVAPPRVRMKDIPGMPGTAVGSALRLFQFLFALISLSVMLTTTDFPTVTAFSYLVAAVGLQTLWSLALAVIDIYALLVRRSLRNPRVMSLFTIGDGQQDNTLDNFLVQITSTLTYAAACASAGITVLISNDLDKCNVNHCKRFMSATAMAFISWFATLPSFFLNFWSLASH
Gene family
Gene family
subfamily
--
--
KEGG pathway
KO
Enzyme
pathway
mapID
--
--
--
--
Gene Ontology
GO term
Ontology
Name
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
18.704
SRR3591706
second leaf
13.533
SRR3591707
mature leaf
17.551
SRR3591708
Shoot apex
14.815
SRR3591709
Stem
26.102
SRR3591710
White floral bud
18.983
SRR3591711
White flower
25.997
SRR3591712
Green floral bud
19.208
SRR3591713
Yellow flower
6.392
SRP173429
SRR8316895
Juvenile bud stage
11.575
SRR8316896
Juvenile bud stage
14.577
SRR8316897
Juvenile bud stage
7.005
SRR8316894
Third green stage
6.335
SRR8316900
Third green stage
18.335
SRR8316901
Third green stage
13.063
SRR8316898
Complete white stage
1.973
SRR8316899
Complete white stage
18.962
SRR8316903
Complete white stage
6.334
SRR8316902
Silver flowering stage
1.243
SRR8316904
Silver flowering stage
3.866
SRR8316905
Silver flowering stage
1.142
SRR8316906
Gold flowering stage
1.666
SRR8316907
Gold flowering stage
5.259
SRR8316908
Gold flowering stage
4.982
SRP132670
SRR6706286
Control
20.972
SRR6706287
Light intensity 50%
15.767
SRR6706288
Light intensity 20%
17.065
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
15.788
CNS0095593
Slightly white alabastrum(diploid) 2
17.886
CNS0095594
Slightly white alabastrum(diploid) 3
17.918
CNS0095595
Whole white alabastrum(diploid) 2
10.761
CNS0095596
Whole white alabastrum(diploid) 3
12.945
CNS0095597
Whole white alabastrum(diploid) 4
9.103
CNS0095598
Silvery flower (diploied) 1
22.771
CNS0095599
Silvery flower (diploied) 2
17.801
CNS0095600
Silvery flower (diploied) 3
19.055
CNS0095601
Golden flower (diploid) 1
15.059
CNS0095602
Golden flower (diploid) 2
19.337
CNS0095603
Golden flower (diploid) 3
20.601
CNS0095604
Slightly white alabastrum(tetraploid) 1
13.156
CNS0095605
Slightly white alabastrum(tetraploid) 2
11.614
CNS0095606
Slightly white alabastrum(tetraploid) 3
18.182
CNS0095607
Whole white alabastrum(tetraploid) 1
8.319
CNS0095608
Whole white alabastrum(tetraploid) 2
8.961
CNS0095609
Whole white alabastrum(tetraploid) 3
13.184
CNS0095610
Silvery flower (diploied) 1
14.240
CNS0095611
Silvery flower (diploied) 2
13.169
CNS0095612
Silvery flower (diploied) 3
8.368
CNS0095613
Golden flower (tetraploid) 1
5.289
CNS0095614
Golden flower (tetraploid) 2
11.306
CNS0095615
Golden flower (tetraploid) 3
3.134
CRA001975
CRR073297
Stem 1
23.805
CRR073298
Stem 2
22.381
CRR073299
Stem 3
25.339
CRR073300
Leaf 1
20.608
CRR073301
Leaf 2
27.117
CRR073302
Leaf 3
17.483
CRR073303
Juvenile bud 1
24.133
CRR073304
Juvenile bud 2
12.528
CRR073305
Juvenile bud 3
31.507
CRR073306
Third green 1
2.637
CRR073307
Third green 2
3.571
CRR073308
Third green 3
4.794
CRR073309
Second white 1
6.092
CRR073310
Second white 2
1.279
CRR073311
Second white 3
2.242
CRR073312
Silver flowering 1
1.340
CRR073313
Silver flowering 2
3.863
CRR073314
Silver flowering 3
1.831
CRR073315
Gold flowering 1
12.058
CRR073316
Gold flowering 2
15.251
CRR073317
Gold flowering 3
13.074
CRR073318
Tawny withering 1
32.830
CRR073319
Tawny withering 2
26.708
CRR073320
Tawny withering 3
29.922