Gene detail

Detail information of GWHGAAZE005639

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007208053.1	hypothetical protein PRUPE_ppa002195mg [Prunus persica]
Swissprot	tr\|Q653H7\|ARFR_ORYSJ	Auxin response factor 18
trEMBL	tr\|M5W677\|M5W677_PRUPE	Auxin response factor {ECO:0000256\|RuleBase:RU004561}
TAIR10	AT4G30080.1	auxin response factor 16

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	11239134	11241910	+
GWHAAZE00000002	mRNA	11239134	11241910	+
GWHAAZE00000002	exon	11239134	11240249	+
GWHAAZE00000002	exon	11241044	11241910	+
GWHAAZE00000002	CDS	11239134	11240249	+
GWHAAZE00000002	CDS	11241044	11241910	+

Transcript Sequence
>GWHTAAZE005647 ATGATTACGTTTATGGATTCAAAGGAAAAATTGAAAGAAACTGAGAAATGCTTAGATTCTCAGTTATGGCATGCCTGTGCTGGTAGTATGGTTCAAATGCCGGTAGCTAATTCTAGGGTATTTTACTTCCCTCAGGGGCACGCCGAGCATGCCTCCGGCAATGTTGAATTTAGAAACAGCCTTAGGGTTCCGGCATATATTGGGTGTAGGGTTTGTGCTATTAAATTCATGGCGGATCCAGAGACCGATGAGGTTTACGCAAAAATTAGATTGGTACCCCTAAGGGCTAGTGAGGTTAATTTTGAGGATGAACCAACTGTGGGAATTAATGGATCCGATTCACCAGATAAACCCACCTCGTTTGCAAAGACGTTAACGCAATCAGATGCTAATAATGGTGGGGGATTTTCCGTTCCCCGTTATTGTGCGGAGACGATATTCCCTCGGTTGGATTACTCAGCCGATCCTCCTGTTCAGACCATACTTGCCAAGGACGTCCACGGCGATACATGGAAGTTCCGGCACATATACCGAGGGACGCCAAGGCGGCATCTTTTGACAACAGGGTGGAGTACTTTTGTGAACCACAAGAAGCTCGTGGCCGGGGATTCAATTGTCTTTTTGAGGGCCGAAAATGGGGATCTTTGTGTTGGAATACGAAGGGCGAAGAGGGGAATCGGAGGCGGGTCGGAATCAACTTCCGGTTGGAATCCGTCTGGCGGGAATTGTGTTATGCCATATGGAGGGTTTTCAGCGTTTCTGAGGGAAGATGAGGGGAAATTATTGATCAGAAATGGTAATGGTGGAAGTCCCAGCGGGACTTCAAAGGGTAAGGGGAAAGTGAGGGCTGAATCAGTTATTGAAGCTGCGACACTTGCAGGCAGTGGGCAGCCATTTGAGGTTGTTTATTACCCTCGAGCAAGTACACCGGAGTTTTGCGTGAAGGCCTCGCTCGTAAAGGCGGCGTTGCAGGTCCGTTGGTGCTCGGGAATGAGGTTCAAGATGCCCTTTGAAACAGAGGATTCTTCGCGAATAAGTTGGTTTATGGGAACAATTTCTGCTGTGCAGGTTACGGATCCCATTAGGTGGCCTGATTCTCCTTGGAGGCTTCTGCAGGTGACATGGGATGAGCCCGATTTGCTTCAAAATGTGAAACGCGTAAGCCCGTGGCTGGTGGAATTAGTATCAAACATGCCTGCCATCCATCTTTCCCCCTTTTCACCCCCACGAAAAAAGTTGAGACTACCCCATCACCCGGATTTTCCACTCGACCCCCAAATCCCAATGCCAACATTCCCAAGCACCTTCCTTGGACCCACCCACAGCCCATTTGGTTGTCTCCCAGACAACACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATCAATATGGTTTATCTTTATCAGATCTCCACCTCAATAAACTACAGCCAGGTGGTCTGTTTCCTTGTGGTTTTTCACCACTTGATTACACTGCTGCTATGCCCACTCGGCCCTCCACTAATGCAATCCTCAACAAGCCTAGCAGCAGTGAGAACGTTTCTTGCTTGCTAACCATGAGTAATTCAACTCCTACGTCAAAGAAATCTGATAACCAAAAGCCATCGCAATTTTTACTTTTTGGACAACCGATACTCACTGAACAACAGATCTCTCTAAGCTGCTCTGCTAATAGTCCTTCTGAAGGGAATGCATATAAGAAGCGGAGTATACCGGAGCGTGCATCAAGTGAAGGGCTCCATTGGTACAAGGATAATCACAGAGAAATTGAACCCGAGTTAGAAACTGGTCAATGCAAGGTATTCATGGAATCAGAGGATGTAGGGCGTACTCTTGACCTTTCATTGCTTGGTTCTTACGAAGAACTTTACAGAAAGTTGGCAAACATGTTTGGCATTGAAAGTTCGGAGATGTTGAACCACGTGCTCTATAGGGACGTGACCGGTGCTATCAAGCAGATTGGAGTTGAACCATTTAGGTGA

Network for GWHGAAZE005639

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	121	222	2.50E-21
PF06507.14	Auxin_resp	289	372	4.20E-32

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3-ARF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0009725	biological_process	response to hormone
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.563
	SRR3591706	second leaf	15.123
	SRR3591707	mature leaf	17.768
	SRR3591708	Shoot apex	10.465
	SRR3591709	Stem	25.131
	SRR3591710	White floral bud	12.756
	SRR3591711	White flower	21.175
	SRR3591712	Green floral bud	19.985
	SRR3591713	Yellow flower	28.522
SRP173429	SRR8316895	Juvenile bud stage	9.018
	SRR8316896	Juvenile bud stage	10.553
	SRR8316897	Juvenile bud stage	4.005
	SRR8316894	Third green stage	5.092
	SRR8316900	Third green stage	9.985
	SRR8316901	Third green stage	10.119
	SRR8316898	Complete white stage	2.030
	SRR8316899	Complete white stage	22.905
	SRR8316903	Complete white stage	4.385
	SRR8316902	Silver flowering stage	2.884
	SRR8316904	Silver flowering stage	2.611
	SRR8316905	Silver flowering stage	1.661
	SRR8316906	Gold flowering stage	5.452
	SRR8316907	Gold flowering stage	5.495
	SRR8316908	Gold flowering stage	7.511
SRP132670	SRR6706286	Control	17.735
	SRR6706287	Light intensity 50%	18.947
	SRR6706288	Light intensity 20%	20.451
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.162
	CNS0095593	Slightly white alabastrum(diploid) 2	6.301
	CNS0095594	Slightly white alabastrum(diploid) 3	6.656
	CNS0095595	Whole white alabastrum(diploid) 2	6.155
	CNS0095596	Whole white alabastrum(diploid) 3	4.385
	CNS0095597	Whole white alabastrum(diploid) 4	5.592
	CNS0095598	Silvery flower (diploied) 1	9.747
	CNS0095599	Silvery flower (diploied) 2	8.034
	CNS0095600	Silvery flower (diploied) 3	9.034
	CNS0095601	Golden flower (diploid) 1	5.663
	CNS0095602	Golden flower (diploid) 2	9.351
	CNS0095603	Golden flower (diploid) 3	9.440
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.134
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.463
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.504
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.981
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.494
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.927
	CNS0095610	Silvery flower (diploied) 1	6.876
	CNS0095611	Silvery flower (diploied) 2	8.885
	CNS0095612	Silvery flower (diploied) 3	7.148
	CNS0095613	Golden flower (tetraploid) 1	4.301
	CNS0095614	Golden flower (tetraploid) 2	5.764
	CNS0095615	Golden flower (tetraploid) 3	5.619
CRA001975	CRR073297	Stem 1	17.307
	CRR073298	Stem 2	13.908
	CRR073299	Stem 3	9.989
	CRR073300	Leaf 1	16.858
	CRR073301	Leaf 2	17.122
	CRR073302	Leaf 3	11.242
	CRR073303	Juvenile bud 1	14.049
	CRR073304	Juvenile bud 2	8.807
	CRR073305	Juvenile bud 3	16.601
	CRR073306	Third green 1	5.853
	CRR073307	Third green 2	2.775
	CRR073308	Third green 3	7.238
	CRR073309	Second white 1	5.582
	CRR073310	Second white 2	6.787
	CRR073311	Second white 3	9.807
	CRR073312	Silver flowering 1	15.405
	CRR073313	Silver flowering 2	12.844
	CRR073314	Silver flowering 3	9.728
	CRR073315	Gold flowering 1	5.231
	CRR073316	Gold flowering 2	8.811
	CRR073317	Gold flowering 3	4.236
	CRR073318	Tawny withering 1	16.200
	CRR073319	Tawny withering 2	11.331
	CRR073320	Tawny withering 3	10.400