Detail information of GWHGAAZE005717


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008387478.12.6359E-105PREDICTED: E3 ubiquitin-protein ligase UPL7-like [Malus domestica]
Swissprottr|Q9SCQ2|UPL7_ARATH2E-93E3 ubiquitin-protein ligase UPL7
trEMBLtr|A0A061F0L7|A0A061F0L7_THECC3E-101E3 ubiquitin-protein ligase UPL7 isoform 6 {ECO:0000313|EMBL:EOY08059.1}
TAIR10AT3G53090.26E-81ubiquitin-protein ligase 7

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1254819212548809-
GWHAAZE00000002mRNA1254819212548809-
GWHAAZE00000002exon1254855912548809-
GWHAAZE00000002exon1254819212548459-
GWHAAZE00000002CDS1254855912548809-
GWHAAZE00000002CDS1254819212548459-
Transcript Sequence

Network for GWHGAAZE005717

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00632.26HECT751681.70E-15
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyHECT

KEGG pathway

KO Enzyme pathway mapID
K10588UBE3B Ubiquitin mediated proteolysis map04120

Gene Ontology

GO term OntologyName
GO:0004842molecular_functionubiquitin-protein transferase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf9.977
SRR3591706second leaf7.597
SRR3591707mature leaf7.704
SRR3591708Shoot apex8.580
SRR3591709Stem12.915
SRR3591710White floral bud11.108
SRR3591711White flower9.846
SRR3591712Green floral bud9.042
SRR3591713Yellow flower9.849
SRP173429 SRR8316895Juvenile bud stage 3.835
SRR8316896Juvenile bud stage 5.824
SRR8316897Juvenile bud stage 3.110
SRR8316894Third green stage 2.691
SRR8316900Third green stage 8.543
SRR8316901Third green stage 6.334
SRR8316898Complete white stage 2.403
SRR8316899Complete white stage 7.556
SRR8316903Complete white stage 8.609
SRR8316902Silver flowering stage2.404
SRR8316904Silver flowering stage5.190
SRR8316905Silver flowering stage1.778
SRR8316906Gold flowering stage 5.994
SRR8316907Gold flowering stage 7.781
SRR8316908Gold flowering stage 8.628
SRP132670SRR6706286Control3.255
SRR6706287Light intensity 50%4.250
SRR6706288Light intensity 20%4.173
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.269
CNS0095593Slightly white alabastrum(diploid) 25.836
CNS0095594Slightly white alabastrum(diploid) 34.511
CNS0095595Whole white alabastrum(diploid) 25.297
CNS0095596Whole white alabastrum(diploid) 35.710
CNS0095597Whole white alabastrum(diploid) 44.394
CNS0095598Silvery flower (diploied) 15.133
CNS0095599Silvery flower (diploied) 25.409
CNS0095600Silvery flower (diploied) 38.246
CNS0095601Golden flower (diploid) 19.710
CNS0095602Golden flower (diploid) 25.976
CNS0095603Golden flower (diploid) 36.914
CNS0095604Slightly white alabastrum(tetraploid) 18.676
CNS0095605Slightly white alabastrum(tetraploid) 25.126
CNS0095606Slightly white alabastrum(tetraploid) 39.813
CNS0095607Whole white alabastrum(tetraploid) 17.864
CNS0095608Whole white alabastrum(tetraploid) 26.067
CNS0095609Whole white alabastrum(tetraploid) 36.483
CNS0095610Silvery flower (diploied) 17.721
CNS0095611Silvery flower (diploied) 26.557
CNS0095612Silvery flower (diploied) 37.399
CNS0095613Golden flower (tetraploid) 14.147
CNS0095614Golden flower (tetraploid) 27.764
CNS0095615Golden flower (tetraploid) 38.017
CRA001975CRR073297Stem 19.065
CRR073298Stem 28.311
CRR073299Stem 35.296
CRR073300Leaf 110.161
CRR073301Leaf 25.471
CRR073302Leaf 37.872
CRR073303Juvenile bud 17.257
CRR073304Juvenile bud 25.022
CRR073305Juvenile bud 39.158
CRR073306Third green 11.937
CRR073307Third green 21.738
CRR073308Third green 32.787
CRR073309Second white 12.467
CRR073310Second white 24.959
CRR073311Second white 32.083
CRR073312Silver flowering 13.850
CRR073313Silver flowering 22.641
CRR073314Silver flowering 33.066
CRR073315Gold flowering 13.581
CRR073316Gold flowering 24.120
CRR073317Gold flowering 32.167
CRR073318Tawny withering 17.450
CRR073319Tawny withering 24.842
CRR073320Tawny withering 37.070