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Detail information of GWHGAAZE005721
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
XP_011012418.1
7.7709E-139
PREDICTED: uncharacterized protein LOC105116670 [Populus euphratica]
trEMBL
tr|A0A068VQ04|A0A068VQ04_COFCA
7E-139
Coffea canephora DH200=94 genomic scaffold, scaffold_6850 {ECO:0000313|EMBL:CDP21813.1}
TAIR10
AT3G10040.1
1E-81
sequence-specific DNA binding transcription factors
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000002
gene
12663036
12664121
+
GWHAAZE00000002
mRNA
12663036
12664121
+
GWHAAZE00000002
exon
12663036
12663634
+
GWHAAZE00000002
exon
12663743
12664121
+
GWHAAZE00000002
CDS
12663036
12663634
+
GWHAAZE00000002
CDS
12663743
12664121
+
Transcript Sequence
>GWHTAAZE005729 ATGAAGTGGACCGACAGCATGGTGAGGTTGTTGATAATGGTAGTGTTTTATATTGGGGATGAAGTTGGGTCGGAGGGGAATGATCCGGCAGCCGGGAAAAAGAAGTCCGGCGCCGGCGGGGTTTTGCAGAAGAAAGGGAAGTGGAAATCGGTGTCGAGGGCAATGATGGAGAGAGGGTTTTACGTATCTCCACAGCAATGTGAAGATAAATTCAATGATTTAAACAAAAGATACAAAAGGGTTAATGATATTCTTGGCAAAGGAACTGCTTGCAAAGTCGTTGAAAATCAATCACTTCTGGATACGATGGACCATTTATCGCCCAAAGTAAAGGATGAGGTGAAAAAATTGCTCAATTCTAAGCACTTGTTCTTCAGGGAAATGTGTGCTTATCACAACAGCTGCGGTAACGGAAGTGGTAGTGCCGGAGCAGGTGGTCATCACTCGCCGGAGGTGGCGCAGGCGGAGGGGTCGCAAAATCAGCAACAGAGGTGCTTGCATTCATCTGAAAATATCCAAATTGCTAATAACAATAATAATTTGGGTATTATTAGTAGAGCAGAGACTGAAGGGTCGAAATCGGTTAAAGAATTGTCCGAAGTTGAAAGAGGAAGAAAAAGGGCAAGGAATTTGCCTTTGATTCAACAATTTAGCGGGGAATTGACGAGTGTGGTTCAAGATTTGGGGAAGAGTGCGTGGGAGAAGAGGCAGTGGATGAGGAACAGATTGATGCAATTGGAAGAACAGAGAGTAGGTTATCATTGTCAAGCTTTTGAGATTGAAAAGCAGAGGCTGAAATGGCTGAAATTTAGTAGCAAGAAGGAGAGGGAAATGGAGGTCGAGAAGCTTGCCAATGAGAGGTTGAGGCTTGAGAATGAGAGGATGGTTCTTCTTTTGAGGCAAAAGGAGATGGAGTTGGTTGATTTTCAACAGCCGGGGAATAAGAGGGGTGATCCACCATCTTCAGTTACAGGGTAG
Network for GWHGAAZE005721
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF13837.7
Myb_DNA-bind_4
1
130
1.40E-21
Protein Sequence
>GWHPAAZE005725 MKWTDSMVRLLIMVVFYIGDEVGSEGNDPAAGKKKSGAGGVLQKKGKWKSVSRAMMERGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACKVVENQSLLDTMDHLSPKVKDEVKKLLNSKHLFFREMCAYHNSCGNGSGSAGAGGHHSPEVAQAEGSQNQQQRCLHSSENIQIANNNNNLGIISRAETEGSKSVKELSEVERGRKRARNLPLIQQFSGELTSVVQDLGKSAWEKRQWMRNRLMQLEEQRVGYHCQAFEIEKQRLKWLKFSSKKEREMEVEKLANERLRLENERMVLLLRQKEMELVDFQQPGNKRGDPPSSVTG
Gene family
Gene family
subfamily
Transcription Factors Family
Trihelix
KEGG pathway
KO
Enzyme
pathway
mapID
--
--
--
--
Gene Ontology
GO term
Ontology
Name
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
15.412
SRR3591706
second leaf
2.000
SRR3591707
mature leaf
0.168
SRR3591708
Shoot apex
6.309
SRR3591709
Stem
42.131
SRR3591710
White floral bud
4.200
SRR3591711
White flower
5.894
SRR3591712
Green floral bud
8.268
SRR3591713
Yellow flower
1.672
SRP173429
SRR8316895
Juvenile bud stage
15.233
SRR8316896
Juvenile bud stage
25.737
SRR8316897
Juvenile bud stage
22.329
SRR8316894
Third green stage
6.048
SRR8316900
Third green stage
11.770
SRR8316901
Third green stage
11.311
SRR8316898
Complete white stage
5.729
SRR8316899
Complete white stage
7.468
SRR8316903
Complete white stage
7.406
SRR8316902
Silver flowering stage
11.222
SRR8316904
Silver flowering stage
23.833
SRR8316905
Silver flowering stage
12.222
SRR8316906
Gold flowering stage
14.290
SRR8316907
Gold flowering stage
26.037
SRR8316908
Gold flowering stage
32.828
SRP132670
SRR6706286
Control
5.744
SRR6706287
Light intensity 50%
7.494
SRR6706288
Light intensity 20%
11.205
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
6.628
CNS0095593
Slightly white alabastrum(diploid) 2
7.214
CNS0095594
Slightly white alabastrum(diploid) 3
6.502
CNS0095595
Whole white alabastrum(diploid) 2
7.964
CNS0095596
Whole white alabastrum(diploid) 3
8.869
CNS0095597
Whole white alabastrum(diploid) 4
7.345
CNS0095598
Silvery flower (diploied) 1
6.566
CNS0095599
Silvery flower (diploied) 2
3.868
CNS0095600
Silvery flower (diploied) 3
1.422
CNS0095601
Golden flower (diploid) 1
5.793
CNS0095602
Golden flower (diploid) 2
4.129
CNS0095603
Golden flower (diploid) 3
4.166
CNS0095604
Slightly white alabastrum(tetraploid) 1
10.520
CNS0095605
Slightly white alabastrum(tetraploid) 2
12.227
CNS0095606
Slightly white alabastrum(tetraploid) 3
7.787
CNS0095607
Whole white alabastrum(tetraploid) 1
5.512
CNS0095608
Whole white alabastrum(tetraploid) 2
6.464
CNS0095609
Whole white alabastrum(tetraploid) 3
10.778
CNS0095610
Silvery flower (diploied) 1
3.686
CNS0095611
Silvery flower (diploied) 2
2.146
CNS0095612
Silvery flower (diploied) 3
8.592
CNS0095613
Golden flower (tetraploid) 1
4.324
CNS0095614
Golden flower (tetraploid) 2
4.248
CNS0095615
Golden flower (tetraploid) 3
0.468
CRA001975
CRR073297
Stem 1
34.710
CRR073298
Stem 2
39.050
CRR073299
Stem 3
32.466
CRR073300
Leaf 1
32.217
CRR073301
Leaf 2
22.095
CRR073302
Leaf 3
31.542
CRR073303
Juvenile bud 1
36.782
CRR073304
Juvenile bud 2
17.139
CRR073305
Juvenile bud 3
21.291
CRR073306
Third green 1
1.754
CRR073307
Third green 2
3.970
CRR073308
Third green 3
13.015
CRR073309
Second white 1
2.279
CRR073310
Second white 2
3.319
CRR073311
Second white 3
0.594
CRR073312
Silver flowering 1
1.338
CRR073313
Silver flowering 2
3.211
CRR073314
Silver flowering 3
2.527
CRR073315
Gold flowering 1
0.830
CRR073316
Gold flowering 2
1.040
CRR073317
Gold flowering 3
0.375
CRR073318
Tawny withering 1
320.572
CRR073319
Tawny withering 2
79.520
CRR073320
Tawny withering 3
514.977