Gene detail

Detail information of GWHGAAZE005788

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006341101.1	PREDICTED: signal recognition particle 54 kDa protein, chloroplastic-like [Solanum tuberosum]
Swissprot	tr\|P37107\|SR54C_ARATH	Signal recognition particle 54 kDa protein, chloroplastic (Precursor)
trEMBL	tr\|M1AHD8\|M1AHD8_SOLTU	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400022884}
TAIR10	AT5G03940.1	chloroplast signal recognition particle 54 kDa subunit

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	13886518	13898131	-
GWHAAZE00000002	mRNA	13886518	13898131	-
GWHAAZE00000002	exon	13898096	13898131	-
GWHAAZE00000002	exon	13897909	13898010	-
GWHAAZE00000002	exon	13891696	13891834	-
GWHAAZE00000002	exon	13891164	13891231	-
GWHAAZE00000002	exon	13890977	13891078	-
GWHAAZE00000002	exon	13889652	13889804	-
GWHAAZE00000002	exon	13889494	13889571	-
GWHAAZE00000002	exon	13889003	13889128	-
GWHAAZE00000002	exon	13888789	13888891	-
GWHAAZE00000002	exon	13888070	13888170	-
GWHAAZE00000002	exon	13887827	13887964	-
GWHAAZE00000002	exon	13887591	13887734	-
GWHAAZE00000002	exon	13887432	13887507	-
GWHAAZE00000002	exon	13887042	13887127	-
GWHAAZE00000002	exon	13886781	13886906	-
GWHAAZE00000002	exon	13886518	13886625	-
GWHAAZE00000002	CDS	13898096	13898131	-
GWHAAZE00000002	CDS	13897909	13898010	-
GWHAAZE00000002	CDS	13891696	13891834	-
GWHAAZE00000002	CDS	13891164	13891231	-
GWHAAZE00000002	CDS	13890977	13891078	-
GWHAAZE00000002	CDS	13889652	13889804	-
GWHAAZE00000002	CDS	13889494	13889571	-
GWHAAZE00000002	CDS	13889003	13889128	-
GWHAAZE00000002	CDS	13888789	13888891	-
GWHAAZE00000002	CDS	13888070	13888170	-
GWHAAZE00000002	CDS	13887827	13887964	-
GWHAAZE00000002	CDS	13887591	13887734	-
GWHAAZE00000002	CDS	13887432	13887507	-
GWHAAZE00000002	CDS	13887042	13887127	-
GWHAAZE00000002	CDS	13886781	13886906	-
GWHAAZE00000002	CDS	13886518	13886625	-

Transcript Sequence
>GWHTAAZE005796 ATGAGAGACATTAGAAGGGCTCTTTTAGAAGCAGACGTCAGCCTTCCTGTTGTGAGAAGGTTTGTCCAAGCTGTTAGCGAACAAGCTGTTGGTGTTGGCTTGGTTCGTGGAGTGAAACCAGATCAACAATTGGTTAAAAGAGAGCTATGGGGTTTGATCAATTGCAAGACTACTTTCATTACCGTTCCACGAAAAAAGAGAAGCATCATTACAGCTGAAATGTTCGGCCAGCTCACGAGCGGCCTCGAATCAGCTTGGAACAGACTCAAAGGAGAAGAGGTCTTGACAAAGGAAAATATTGTGGAACCAATGAGAGACATTAGAAGGGCTCTTTTAGAAGCAGACGTCAGCCTTCCTGTTGTGAGAAGGTTTGTCCAAGCTGTTAGCGAACAAGCTGTTGGTGTTGGCTTGGTTCGTGGAGTGAAACCAGATCAACAATTGGTTAAAATTGTACATGACGAGCTTGTCAAACTGATGGGTGGAGAGGTTGCTGAACTTGTGTTTGCAAAATCTGGTCCCACTGTAATCTTATTGGCTGGTCTACAAGGTGTTGGAAAGACAACTGTTAGTGCTAAGTTAGCTTTGTACCTCAAGAAACAGGGGAAGAGTTGCATGCTGATTGCTGGAGATGTCTATAGACCTGCTGCAATTGACCAACTTGTTATTCTGGGTGAACAGGTGGATGTGCCTGTTTATACAGCAGGCACTAACCTTAAACCTGCAGAAATAGCCATGGAAGGTCTAAAAGAGGCTCAAAAGAAAAACGTAGACGTGGTCATAATGGATACTGCTGGAAGACTTCAGATAGATAAAACTATGATGGATGAACTGAAAGAAGTTAAACATGCTTTAAATCCCAAAGAGGTTTTACTTGTTGTGGACGCAATGACTGGCCAAGAAGCTGCAGCCTTGGTTACAACGTTCAATCTTGAAATTGGAATTACTGGTGCCATTTTGACAAAGTTAGATGGGGATTCTAGAGGTGGAGCAGCTTTGAGTGTTAAAGAGGTATCAGGAAAGCCAATAAAGCTTGTAGGACGGGGAGAGCGTATGGAGGACCTTGAGCCCTTCTACCCAGCTCGTATGGCTGGACGAGTCTTAGGAATGGGAGATGTTCTATCTTTTGTGGAGAAGGCACAAGAAGTTATGCGCCAAGAAGATGCTGAAGAATTGCAGAAGAAGATCATGAGTGCAAAATTCGACTTTAATGACTTCCTAAAGCAAACTCGTGCCGTAGCACGGATGGGATCCGTGTCCCGTGTTATTGGAATGATTCCTGGCATGGGAAAGATTACTCCTGCACAAATTCGAGAGGCAGAGAAGAGCTTAATGATAGTAGAGTCGATGATTGAAGTGATGACACCAGAGGAAAGGGAGAAACCAGAACTTTTGGCAGAATCCCCTGAGAGGAGGAAGAGAATTGCTCAAGAATCAGGGAAAACAGAGCAGCAGGTGAGTCAACTCGTTGCTCAAATTTTCCAAATGCGCATTCGCATGAAGAACTTAATGGGCGTAATGGAAGGTGGATCTGTTCCTGCACTGAATAATCTTGAGGAGGCGCTTAAATCTGAACAAAAGGCTCCTCCTGGTACAGCTCGGAGGAAGAGAAAATCTGTATTGAGAAGGCATTTGGTGAATGCAGCATCAGCAAGTCGGAGCACTCCTGGTTTTGAGGCCGAGAATTGA

Network for GWHGAAZE005788

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02881.20	SRP54_N	1	46	2.20E-07
PF02881.20	SRP54_N	78	155	1.30E-18
PF00448.23	SRP54	173	367	1.30E-74
PF02978.20	SRP_SPB	399	496	2.90E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03106	SRP54, ffh	Protein export	map03060
		Bacterial secretion system	map03070
		Quorum sensing	map02024

Gene Ontology

GO term	Ontology	Name
GO:0006614	biological_process	SRP-dependent cotranslational protein targeting to membrane
GO:0048500	cellular_component	signal recognition particle
GO:0008312	molecular_function	7S RNA binding
GO:0005525	molecular_function	GTP binding
GO:0003924	molecular_function	GTPase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	49.911
	SRR3591706	second leaf	65.665
	SRR3591707	mature leaf	45.639
	SRR3591708	Shoot apex	65.019
	SRR3591709	Stem	21.249
	SRR3591710	White floral bud	12.072
	SRR3591711	White flower	10.101
	SRR3591712	Green floral bud	16.849
	SRR3591713	Yellow flower	7.372
SRP173429	SRR8316895	Juvenile bud stage	26.606
	SRR8316896	Juvenile bud stage	26.374
	SRR8316897	Juvenile bud stage	23.274
	SRR8316894	Third green stage	11.272
	SRR8316900	Third green stage	27.765
	SRR8316901	Third green stage	24.100
	SRR8316898	Complete white stage	6.268
	SRR8316899	Complete white stage	26.073
	SRR8316903	Complete white stage	12.843
	SRR8316902	Silver flowering stage	3.198
	SRR8316904	Silver flowering stage	5.514
	SRR8316905	Silver flowering stage	2.436
	SRR8316906	Gold flowering stage	9.695
	SRR8316907	Gold flowering stage	9.931
	SRR8316908	Gold flowering stage	8.666
SRP132670	SRR6706286	Control	30.231
	SRR6706287	Light intensity 50%	31.431
	SRR6706288	Light intensity 20%	32.652
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.683
	CNS0095593	Slightly white alabastrum(diploid) 2	22.421
	CNS0095594	Slightly white alabastrum(diploid) 3	20.021
	CNS0095595	Whole white alabastrum(diploid) 2	20.608
	CNS0095596	Whole white alabastrum(diploid) 3	14.161
	CNS0095597	Whole white alabastrum(diploid) 4	14.855
	CNS0095598	Silvery flower (diploied) 1	38.365
	CNS0095599	Silvery flower (diploied) 2	31.133
	CNS0095600	Silvery flower (diploied) 3	14.846
	CNS0095601	Golden flower (diploid) 1	36.175
	CNS0095602	Golden flower (diploid) 2	18.209
	CNS0095603	Golden flower (diploid) 3	20.947
	CNS0095604	Slightly white alabastrum(tetraploid) 1	23.213
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.054
	CNS0095606	Slightly white alabastrum(tetraploid) 3	43.724
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.991
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.324
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.184
	CNS0095610	Silvery flower (diploied) 1	14.465
	CNS0095611	Silvery flower (diploied) 2	24.067
	CNS0095612	Silvery flower (diploied) 3	14.544
	CNS0095613	Golden flower (tetraploid) 1	9.246
	CNS0095614	Golden flower (tetraploid) 2	12.357
	CNS0095615	Golden flower (tetraploid) 3	4.769
CRA001975	CRR073297	Stem 1	53.651
	CRR073298	Stem 2	51.727
	CRR073299	Stem 3	50.149
	CRR073300	Leaf 1	40.579
	CRR073301	Leaf 2	43.816
	CRR073302	Leaf 3	32.984
	CRR073303	Juvenile bud 1	28.643
	CRR073304	Juvenile bud 2	20.324
	CRR073305	Juvenile bud 3	35.429
	CRR073306	Third green 1	4.752
	CRR073307	Third green 2	4.489
	CRR073308	Third green 3	4.336
	CRR073309	Second white 1	7.847
	CRR073310	Second white 2	7.057
	CRR073311	Second white 3	5.360
	CRR073312	Silver flowering 1	4.057
	CRR073313	Silver flowering 2	2.361
	CRR073314	Silver flowering 3	2.860
	CRR073315	Gold flowering 1	29.742
	CRR073316	Gold flowering 2	48.550
	CRR073317	Gold flowering 3	21.868
	CRR073318	Tawny withering 1	24.037
	CRR073319	Tawny withering 2	15.809
	CRR073320	Tawny withering 3	19.019