Detail information of GWHGAAZE005867


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008233047.10PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic isoform X1 [Prunus mume]
Swissprottr|O24457|ODPA3_ARATH0Pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic (Precursor)
trEMBLtr|D7U830|D7U830_VITVI0Pyruvate dehydrogenase E1 component subunit alpha {ECO:0000256|RuleBase:RU361139}
TAIR10AT1G01090.10pyruvate dehydrogenase E1 alpha

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene1528523915288939+
GWHAAZE00000002mRNA1528523915288939+
GWHAAZE00000002exon1528523915285490+
GWHAAZE00000002exon1528599315286773+
GWHAAZE00000002exon1528866215288939+
GWHAAZE00000002CDS1528523915285490+
GWHAAZE00000002CDS1528599315286773+
GWHAAZE00000002CDS1528866215288939+
Transcript Sequence

Network for GWHGAAZE005867

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00676.21E1_dh973991.80E-81
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00161PDHA, pdhA Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Glycolysis / Gluconeogenesismap00010
Citrate cyclemap00020
Pyruvate metabolismmap00620
HIF-1 signaling pathwaymap04066
Glucagon signaling pathwaymap04922

Gene Ontology

GO term OntologyName
GO:0006086biological_processacetyl-CoA biosynthetic process from pyruvate
GO:0043231cellular_componentintracellular membrane-bounded organelle
GO:0016624molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
GO:0004739molecular_functionpyruvate dehydrogenase (acetyl-transferring) activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf124.079
SRR3591706second leaf250.485
SRR3591707mature leaf103.558
SRR3591708Shoot apex160.363
SRR3591709Stem68.623
SRR3591710White floral bud220.997
SRR3591711White flower170.604
SRR3591712Green floral bud231.487
SRR3591713Yellow flower123.677
SRP173429 SRR8316895Juvenile bud stage 109.203
SRR8316896Juvenile bud stage 169.234
SRR8316897Juvenile bud stage 68.873
SRR8316894Third green stage 68.089
SRR8316900Third green stage 257.944
SRR8316901Third green stage 235.140
SRR8316898Complete white stage 97.240
SRR8316899Complete white stage 235.906
SRR8316903Complete white stage 140.358
SRR8316902Silver flowering stage94.827
SRR8316904Silver flowering stage121.599
SRR8316905Silver flowering stage65.940
SRR8316906Gold flowering stage 181.777
SRR8316907Gold flowering stage 180.412
SRR8316908Gold flowering stage 173.412
SRP132670SRR6706286Control229.200
SRR6706287Light intensity 50%255.487
SRR6706288Light intensity 20%278.850
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1134.771
CNS0095593Slightly white alabastrum(diploid) 2134.310
CNS0095594Slightly white alabastrum(diploid) 3118.345
CNS0095595Whole white alabastrum(diploid) 2136.143
CNS0095596Whole white alabastrum(diploid) 3150.481
CNS0095597Whole white alabastrum(diploid) 4126.765
CNS0095598Silvery flower (diploied) 188.649
CNS0095599Silvery flower (diploied) 287.791
CNS0095600Silvery flower (diploied) 3175.554
CNS0095601Golden flower (diploid) 174.882
CNS0095602Golden flower (diploid) 2141.371
CNS0095603Golden flower (diploid) 3144.819
CNS0095604Slightly white alabastrum(tetraploid) 1178.422
CNS0095605Slightly white alabastrum(tetraploid) 2142.084
CNS0095606Slightly white alabastrum(tetraploid) 3262.410
CNS0095607Whole white alabastrum(tetraploid) 1126.186
CNS0095608Whole white alabastrum(tetraploid) 2154.488
CNS0095609Whole white alabastrum(tetraploid) 3288.790
CNS0095610Silvery flower (diploied) 1198.857
CNS0095611Silvery flower (diploied) 2200.708
CNS0095612Silvery flower (diploied) 3228.284
CNS0095613Golden flower (tetraploid) 1140.626
CNS0095614Golden flower (tetraploid) 2192.313
CNS0095615Golden flower (tetraploid) 3161.279
CRA001975CRR073297Stem 1204.836
CRR073298Stem 2201.624
CRR073299Stem 3220.373
CRR073300Leaf 1309.306
CRR073301Leaf 2281.555
CRR073302Leaf 3303.758
CRR073303Juvenile bud 1325.855
CRR073304Juvenile bud 2361.805
CRR073305Juvenile bud 3284.086
CRR073306Third green 1346.699
CRR073307Third green 2276.252
CRR073308Third green 3303.223
CRR073309Second white 1242.121
CRR073310Second white 2193.697
CRR073311Second white 3194.435
CRR073312Silver flowering 1189.891
CRR073313Silver flowering 2193.396
CRR073314Silver flowering 3159.259
CRR073315Gold flowering 1181.893
CRR073316Gold flowering 2212.742
CRR073317Gold flowering 3214.480
CRR073318Tawny withering 1124.090
CRR073319Tawny withering 278.583
CRR073320Tawny withering 3154.072