Gene detail

Detail information of GWHGAAZE005973

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009620190.1	0	PREDICTED: uncharacterized protein LOC104112065 [Nicotiana tomentosiformis]
Swissprot	tr\|P25848\|PHY1_CERPU	4E-41	Protein kinase
trEMBL	tr\|A0A068UWW4\|A0A068UWW4_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_62 {ECO:0000313\|EMBL:CDP12123.1}
TAIR10	AT1G64300.2	0	Protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	17157543	17161241	-
GWHAAZE00000002	mRNA	17157543	17161241	-
GWHAAZE00000002	exon	17161233	17161241	-
GWHAAZE00000002	exon	17158206	17160771	-
GWHAAZE00000002	exon	17157543	17158120	-
GWHAAZE00000002	CDS	17161233	17161241	-
GWHAAZE00000002	CDS	17158206	17160771	-
GWHAAZE00000002	CDS	17157813	17158120	-
GWHAAZE00000002	three_prime_UTR	17157543	17157812	-

Transcript Sequence
>GWHTAAZE005981 ATGGAGCGACTGTTCTTTTCTGCAGAAACCCAAGCTGGGAACTTGTATTATTCCTCAAAAGATAAGATGGATCAATTCAGGCAAATCGGGGAGGTTTTGGGGAGTTTGAAGGCACTTATGGTGTTGAAACACGAAATTCCCATCAATCAACGGCAATGTTGTTTGCTGTTCGATATGTTCAATCTGGCATTCGAAACTATAGCTGAAGAGATCAGCCAGAACCTGAAGCTAGAAGAGAAGAACACAAAGTGGAAATCTCTTGAGCACCCAATGAAAGAGCTTCATCGGATATTCAGAGAAGGCGAATTCTACATAAGAACTTGTTTGGACACAAAGGACTGGTGGGGAAAAGTAATCATTTTCCACAACAACAAAGACTGTGTAGAGTTACACATTCATAATCTCCTCTGCTGCTTTCCTGTTGTCATCGAGGCCATTGAAACAGCTGCAGAAACCTCAGGTATTAATCAAGATGATATGCAAAAGAGGAGGCACATGATTCTGAGGAAATATGATTCCGAGTGGAATGACACAAAACTTTTCCAGTGGATGTTTGGGAAACAGTACTTAGTTCCTCGGGATATTTGCAGCCATTTGGATAATGTTTGGAAAGAAGACCGGTGGATTCTTCTTGAAACGATAAGGGAGAGGAAAACTTTGGCCTCAAAACTGAAGCATGAGCAGATTCTCGGAGAGTTGCTGATCAAGAAGCTAAATGGGTCAGACGTATCAAACATGAAGCTAATGCCGAGTTTGGCTTTAGTGGGAGCGAAGGATTATTCTGTGAAGCGTCGGTTAGGATCGGGTGGCAGCCGGTTCAAGGAGATCCATTGGTTGGGGGATAATTTCGCTTTAAGAACCTTTTTTGGGGACATTGAACCGTTAAACGGTGAGATTTCTTTGTTGCTATCACTTGCACACCCCAACATTATGCAATACCTTTGCGGGTTCTATGACGAGGAAAAGAAAGAGGGTTTTCTTGTCATGGAGCTAATGAGCAAGGATCTTTGCACTTACATAAAAGAGAATTGTGGCCAAAGAAAACGAATCCCGTTCTCGGTCCCCGTGGCGGTCGATATAATGCTTCAAATTGCAAGAGGAATGGAATATCTGCACTCGAGAAAGATATATCACGGAAATTTGAACCCATCAAGTGTGCTTCTTAGAGCAAGGAATTTGTCCACCGAAGGTTATTTTCATGCAAAAGTAACGGGGTTCGGTCTCAACTCGGTCAAGAGCTATGGTCCACGAGGTTCTCCAAAACAAAACGGAATCGACCCCGTTATATGGTCTGCCCCAGAAGTATTGGCTGAACAAGAAAACTCAGGCGAGAAAAGTAGTTCTAAGTACACAGAAAAGGCCGATGTTTACGGCTTTGGGATGCTCTGTTTCGAGCTTTTAACGGGGAAAGTTCCGTTCGAAGATGGCCATCTTCAAGGTGACAAAATGGGTAGAAACATAAGGGCCGGAGAGAGACCTCTTTTCCCTCACCCTTCACCAAAATTCCTTTCGAGCTTGACAAGAAGATGTTGGCACACTAACCCAGTTCATCGTCCGAGCTTCTCATCTATATGTAGGATTCTACGGTACATCAAGAAAATTCTTGTGATAAATCCTGACCACGGTGAACCTGAAGCACCGCCCCCTCTTGTAGATTATTGTGACATAGAGGTGGGGTACTTAAAGAAGTTTTCCGGGGAGAGGAATTCGGATTTGGCACCAGTGTCACAAATTCCTTTCCAGTTGTTTTCCTATAGGCTCCTTGAGAAAGAAAAAAATTCGGCAAGTTTTAAAGACAAGAGTTGGGATTTAGCAAACGAGAGTTCGATTGATGAGCAGATGGGTTTAATGGATGATATCTTCTTGGTGCCGAGTGATGGAAGATCGGTCTGTTCTGAGATTATAGAGTCAAAGAAATCAACGGTTACTGATCAAAGATCGGTTGTATCTGAGATTCCACAGAGGAAACTTCTCTCGGCTGATCAAAGGAGTTTCTTTTGCGAGAGTCCGAGGAGGAATTTTTCGTCGGTAACACAAGAAGGTGATCAAAGTCCAGTCTGGGCAGAAAGTAGAGATAGGGAATTTTCATTTATGGTAACGGGTGATCAAAAGTCCGCTTTTGCTGAGACTCCAGAGATGAAAGTTTCATCAACAAAAACAGATAAAAAGCCGGTCAGTTCCGATATTCCCAAGGTGAAACTTTTAAGATGTCATTCAGAGAATCTACTGAAGAAAGTTACATCACCAACAGGAGCTGATCGAAGGACTCTTTGGCGAGAGAATTCACTCAAAGAAGCTTCATCCAGAGCAACCGAACCTGTGGAAAAGAAAACTCTTGCACCTATAAAAACCAATAGAATATTAGCTATACCAGAAAAGAAAGTTGAATCAACAACACCAACCACTCCGAAGGTAGTTTGTTCAGTTATACCTGAGAAGAAAGTCGTCGTTTCAACAACACCAACCACTACAAAGGAGAAGAAAGTCGTCTTTCCGACAACACCAACCACTCCAAAGGAGAAGAAAGTTTCTTTAACAAAAAGAATGAAAGACGCAAAGAACAAAATAATGCCCTGGACATTAAAAAGGAATACACCATCATCTTCACCAAAGCGAACCCCAAAAGGATACTTATCACCGATATTATCATCAGCAACCAGCTCGAAGGGATATTCATCACCACCAAGAACCCCAAACCCCAAAAGACACTCAACTCCAGGATATTCACCAATCCAACGTCCTAAAGATTATTCGTCACCAAAAGCATCACCACTGAATCCATTTTCTCAATGTACAAAAGTGAAACAAGAGACTCAGTTACTATCATTTATGAGCCCTACTAAACATGCAAGAGTTCAGCTCACAGACACAGAGAAGGCATAAATTCATTCATTTTCATCGAGCACACACGTTTTCTGTAGATAAGAGTAGTTGAACTAGATTCTATACTTCGATGTCTCTGTTCAAGAACTTCATGTTGTAGAACAATTTTTTATGTATGTATAATAGCCGAGTCATGAAATTTTCCCCCCTCCGAATTTCGGATCTGATTTGTATTGCATCTAACAGATATCGTTTTCTTTCACAAGTCTACTTGTATTCGTACTTGATCTATATTTTGCCTTATCAAAATCCAAAAAAAGCAAGGAAGAA

Network for GWHGAAZE005973

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06760.12	DUF1221	44	256	1.10E-98
PF07714.18	PK_Tyr_Ser-Thr	296	527	7.10E-35

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL_Gdt

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.045
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.169
	SRR3591708	Shoot apex	0.064
	SRR3591709	Stem	0.496
	SRR3591710	White floral bud	87.771
	SRR3591711	White flower	6.116
	SRR3591712	Green floral bud	45.298
	SRR3591713	Yellow flower	3.779
SRP173429	SRR8316895	Juvenile bud stage	0.399
	SRR8316896	Juvenile bud stage	2.270
	SRR8316897	Juvenile bud stage	0.824
	SRR8316894	Third green stage	2.205
	SRR8316900	Third green stage	23.544
	SRR8316901	Third green stage	18.948
	SRR8316898	Complete white stage	0.301
	SRR8316899	Complete white stage	1.058
	SRR8316903	Complete white stage	0.796
	SRR8316902	Silver flowering stage	0.961
	SRR8316904	Silver flowering stage	2.455
	SRR8316905	Silver flowering stage	0.635
	SRR8316906	Gold flowering stage	0.699
	SRR8316907	Gold flowering stage	0.311
	SRR8316908	Gold flowering stage	0.661
SRP132670	SRR6706286	Control	7.574
	SRR6706287	Light intensity 50%	8.487
	SRR6706288	Light intensity 20%	8.368
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.995
	CNS0095593	Slightly white alabastrum(diploid) 2	9.813
	CNS0095594	Slightly white alabastrum(diploid) 3	11.032
	CNS0095595	Whole white alabastrum(diploid) 2	48.531
	CNS0095596	Whole white alabastrum(diploid) 3	49.986
	CNS0095597	Whole white alabastrum(diploid) 4	73.639
	CNS0095598	Silvery flower (diploied) 1	2.562
	CNS0095599	Silvery flower (diploied) 2	12.436
	CNS0095600	Silvery flower (diploied) 3	3.770
	CNS0095601	Golden flower (diploid) 1	3.646
	CNS0095602	Golden flower (diploid) 2	3.150
	CNS0095603	Golden flower (diploid) 3	2.633
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.351
	CNS0095605	Slightly white alabastrum(tetraploid) 2	26.007
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.273
	CNS0095607	Whole white alabastrum(tetraploid) 1	71.394
	CNS0095608	Whole white alabastrum(tetraploid) 2	92.561
	CNS0095609	Whole white alabastrum(tetraploid) 3	41.777
	CNS0095610	Silvery flower (diploied) 1	2.103
	CNS0095611	Silvery flower (diploied) 2	8.842
	CNS0095612	Silvery flower (diploied) 3	24.341
	CNS0095613	Golden flower (tetraploid) 1	2.534
	CNS0095614	Golden flower (tetraploid) 2	1.023
	CNS0095615	Golden flower (tetraploid) 3	9.150
CRA001975	CRR073297	Stem 1	2.861
	CRR073298	Stem 2	1.683
	CRR073299	Stem 3	0.917
	CRR073300	Leaf 1	20.392
	CRR073301	Leaf 2	11.273
	CRR073302	Leaf 3	2.915
	CRR073303	Juvenile bud 1	20.797
	CRR073304	Juvenile bud 2	13.022
	CRR073305	Juvenile bud 3	3.428
	CRR073306	Third green 1	9.307
	CRR073307	Third green 2	7.550
	CRR073308	Third green 3	9.454
	CRR073309	Second white 1	0.300
	CRR073310	Second white 2	2.790
	CRR073311	Second white 3	2.515
	CRR073312	Silver flowering 1	10.989
	CRR073313	Silver flowering 2	11.571
	CRR073314	Silver flowering 3	4.482
	CRR073315	Gold flowering 1	4.989
	CRR073316	Gold flowering 2	2.686
	CRR073317	Gold flowering 3	0.456
	CRR073318	Tawny withering 1	10.976
	CRR073319	Tawny withering 2	12.280
	CRR073320	Tawny withering 3	10.478