Gene detail

Detail information of GWHGAAZE005975

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009603046.1	6.5284E-109	PREDICTED: ethylene-responsive transcription factor CRF2 [Nicotiana tomentosiformis]
Swissprot	tr\|Q9SUQ2\|CRF2_ARATH	5E-62	Ethylene-responsive transcription factor CRF2
trEMBL	tr\|K4CPJ2\|K4CPJ2_SOLLC	4E-102	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc08g081960.1.1}
TAIR10	AT4G23750.2	4E-45	cytokinin response factor 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	17199301	17200290	-
GWHAAZE00000002	mRNA	17199301	17200290	-
GWHAAZE00000002	exon	17200208	17200290	-
GWHAAZE00000002	exon	17199301	17200171	-
GWHAAZE00000002	CDS	17200208	17200290	-
GWHAAZE00000002	CDS	17199301	17200171	-

Transcript Sequence
>GWHTAAZE005983 ATGTTGCCTCCAGTCAAGTACACCGAACACCGAACCAAAACTGCGATGGTGAGGCCCTCGCCGCCGGGAACCAACGCCGGCAGAATTGTACGCATATCATTCACTGACGCCGACGCCACCGACTCATCAAGTGATGACGATGAGGTACTTTCTGGCCGGCGGAAAGTGAGGAAGTTCATTAACGAGGTCACAATCGAGCCTTGTTCGACGGTGAACGGTAACGGAAGTGTTAATGGCGTGTGGAGGAGCAGATCTTCGGCGAAAACGAGTAGCCGGAAGAAGACTTCCGGAAAAACGGAATCACCAGCTGTTAATCGGTCTAAGCAGAGCTCCGGGAAGAAGTTTCGAGGCGTACGACAGAGGCCATGGGGTAAATGGGCGGCCGAAATCAGAGATCCGCTCAAACGTGCACGTGTTTGGTTGGGGACCTTCGACACTGCTGAAGAGGCCGCCCTGGTTTACGACCACGCGGCTATTCAGTTGCGTGGCCCCGACGCGCTTACCAACTTCACCACTCCTGCGAAAACGGTGGTTGAAAACAAACCTACGCCGACGGTAACTTGCTCCGGCTACAACTCCAGCGAGGACTCTAATAACAACCTATGCTCTCCAAAGTCCGTTCTAGGGTTTCTCTCTTCCTCGAACGAAGAGTCTGAGAGTCAATCTAACGACGCCGTAAAAGAGGTCTGCGATATTGGAGAGCATATTTCATTACCGGAGGAATTTGCGCCTACAGATACTCTGTTTTCTAACGATTTGTTTGGATTTGAGAACCCGGTATCCGATTTGTTCGACCAACCGGATCTTCCGATTAGTATTTTTGGAGAAGATTGCAATGAATTCTTCCTTGGGTCAAGTAGCGAAGACGGTTTCGGGTCGTCCATGTGGACTACAGATGAGTATTTCCAAGACTTTGGTGATATATTTGGGTCGGATCCTCTAGTTGTTCTTTGA

Network for GWHGAAZE005975

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	114	163	2.90E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-ERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.270
	SRR3591706	second leaf	1.499
	SRR3591707	mature leaf	3.456
	SRR3591708	Shoot apex	4.962
	SRR3591709	Stem	3.586
	SRR3591710	White floral bud	2.447
	SRR3591711	White flower	2.958
	SRR3591712	Green floral bud	2.467
	SRR3591713	Yellow flower	0.342
SRP173429	SRR8316895	Juvenile bud stage	21.891
	SRR8316896	Juvenile bud stage	52.196
	SRR8316897	Juvenile bud stage	13.620
	SRR8316894	Third green stage	11.188
	SRR8316900	Third green stage	3.573
	SRR8316901	Third green stage	5.016
	SRR8316898	Complete white stage	0.334
	SRR8316899	Complete white stage	1.595
	SRR8316903	Complete white stage	1.191
	SRR8316902	Silver flowering stage	0.455
	SRR8316904	Silver flowering stage	0.270
	SRR8316905	Silver flowering stage	0.071
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	1.092
	SRR8316908	Gold flowering stage	0.236
SRP132670	SRR6706286	Control	5.613
	SRR6706287	Light intensity 50%	4.912
	SRR6706288	Light intensity 20%	5.821
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	48.495
	CNS0095593	Slightly white alabastrum(diploid) 2	14.047
	CNS0095594	Slightly white alabastrum(diploid) 3	57.151
	CNS0095595	Whole white alabastrum(diploid) 2	2.455
	CNS0095596	Whole white alabastrum(diploid) 3	1.502
	CNS0095597	Whole white alabastrum(diploid) 4	1.838
	CNS0095598	Silvery flower (diploied) 1	14.909
	CNS0095599	Silvery flower (diploied) 2	3.394
	CNS0095600	Silvery flower (diploied) 3	1.733
	CNS0095601	Golden flower (diploid) 1	2.566
	CNS0095602	Golden flower (diploid) 2	2.709
	CNS0095603	Golden flower (diploid) 3	2.367
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.939
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.005
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.629
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.719
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.586
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.668
	CNS0095610	Silvery flower (diploied) 1	0.608
	CNS0095611	Silvery flower (diploied) 2	1.866
	CNS0095612	Silvery flower (diploied) 3	0.543
	CNS0095613	Golden flower (tetraploid) 1	0.044
	CNS0095614	Golden flower (tetraploid) 2	1.074
	CNS0095615	Golden flower (tetraploid) 3	0.109
CRA001975	CRR073297	Stem 1	26.417
	CRR073298	Stem 2	24.662
	CRR073299	Stem 3	22.136
	CRR073300	Leaf 1	0.512
	CRR073301	Leaf 2	1.287
	CRR073302	Leaf 3	2.630
	CRR073303	Juvenile bud 1	0.244
	CRR073304	Juvenile bud 2	0.088
	CRR073305	Juvenile bud 3	0.208
	CRR073306	Third green 1	0.224
	CRR073307	Third green 2	0.513
	CRR073308	Third green 3	0.386
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.131
	CRR073314	Silver flowering 3	0.256
	CRR073315	Gold flowering 1	0.153
	CRR073316	Gold flowering 2	0.844
	CRR073317	Gold flowering 3	0.214
	CRR073318	Tawny withering 1	2.504
	CRR073319	Tawny withering 2	0.615
	CRR073320	Tawny withering 3	3.988