Gene detail

Detail information of GWHGAAZE006133

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AFC34137.1	0	3-hydroxy-3-methylglutaryl-CoA synthase [Camellia sinensis]
Swissprot	tr\|P54873\|HMCS_ARATH	0	Hydroxymethylglutaryl-CoA synthase
trEMBL	tr\|H9CTV3\|H9CTV3_CAMSI	0	3-hydroxy-3-methylglutaryl-CoA synthase {ECO:0000313\|EMBL:AFC34137.1}
TAIR10	AT4G11820.2	3E-164	hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	19822865	19827054	+
GWHAAZE00000002	mRNA	19822865	19827054	+
GWHAAZE00000002	exon	19822865	19822878	+
GWHAAZE00000002	exon	19822946	19823078	+
GWHAAZE00000002	exon	19824249	19824407	+
GWHAAZE00000002	exon	19824832	19824905	+
GWHAAZE00000002	exon	19825003	19825078	+
GWHAAZE00000002	exon	19825180	19825235	+
GWHAAZE00000002	exon	19825340	19825427	+
GWHAAZE00000002	exon	19825666	19825806	+
GWHAAZE00000002	exon	19825885	19826034	+
GWHAAZE00000002	exon	19826486	19827054	+
GWHAAZE00000002	CDS	19822865	19822878	+
GWHAAZE00000002	CDS	19822946	19823078	+
GWHAAZE00000002	CDS	19824249	19824407	+
GWHAAZE00000002	CDS	19824832	19824905	+
GWHAAZE00000002	CDS	19825003	19825078	+
GWHAAZE00000002	CDS	19825180	19825235	+
GWHAAZE00000002	CDS	19825340	19825427	+
GWHAAZE00000002	CDS	19825666	19825806	+
GWHAAZE00000002	CDS	19825885	19826034	+
GWHAAZE00000002	CDS	19826486	19826677	+
GWHAAZE00000002	three_prime_UTR	19826678	19827054	+

Transcript Sequence
>GWHTAAZE006141 ATGTATGCTGGAAGTTTGACAGCTGTGACTTCACTTCTTGAGAAATATGGGATTGACCCAAAACAAATTGGTCGCCTAGAAGTGGGCAGCGAGACAGTCATAGACAAGAGCAAATCCATTAAGACGTTCCTGATGCAAATTTTTGAGGTCTACGCTGAGGGACCAGCTCGGCCAACTGGAGGAGCAGCTGCTATTGCAATGCTAATAGGGCCTGATGCTCCAATTGCATTTGAAAGCAAATTCAGGGCAAGCCATATGTCTCATGTCTATGATTTTTACAAGCCCAACCTTGGAAGTGAATATCCGGTTGTTGATGGGAAGCTTTCACAAACTTGTTATCTCATGGCACTTGATTCCTGTTACAAACGTTTCTGCGCCAAGTACGAGAAATTGGAAGGGAAAACGTTTTCAATGTCTGATGCAGAATATTTTGTATTTCATTCTCCATATAACAAGCTTGTACAGAAGAGCTTTGCTCGATTGATGTTCAATGACTTCTTGAGGAATGCCAGCTCTGTCAATGAGGCTTCTAAAGAAAAGCTTGCACCATTTTCAACTTTGACTGGCGATGAAAGCTACCAAAGTCGCGATCTTGAGAAGGCATCCCAGCAAGTTGCAAAGCCCCTTTATGATGCAAAGGTGCAACCAACAACTTTGATACCAAAGCAAGTTGGAAACATGTACACTGCATCTCTTTATGCAGCGTTTGCTTCCCTTGTTCACAATAAGCATAGCACGCTGTCAGGCAATAGGGTAGTAATGTTCTCATACGGGAGTGGATTAACTGCCACGATGTTCTCGTTCTATCTTCGTGAAGGCAAACATCCTTTTAGCTTGTCAAACATTGCATCTGTGATGAATGTTGCGGAGAAGTTGAAGTCTAGGCATGAGTTCCCTCCCGAAAAATTTGTCGACGCCTTAAAGTTGATGGAGCACAGGTATGGGGCCAAGGACTTTGTAACGAGCAAGGACTGCAGCCTTCTAGCTCCGGGCACCTATTACCTGACCGAAGTCGATTCCATGTACCGTAGATTCTACTCCAAGAAGGTCGGGGATAAGGCCGAGCTGACCAACGGTCACTGACAATGGACCGGAGATGATTTAATGCAGTAGTAGCATTGGCCGAAGCGTGTTTTCCTTTTCGCAAGTGGTGTTGTCAGTACATAGAAGAATAACCATGCTTTCAGATGCTTTGTTTCGTAATTGCCGTGTAGTTTGCTTTTGCAAGAAGTTTTATCAGAGTTTATTCCTTAAGTAGACTCGTTCCCTCTTTCTTGTGAAAATGAAGGGTGTCGGTAGTATTTGATGAGAATGTTACGTAGAGTTTGTAATCTTCTAGTAATTAATAATCTTTTTTTTTTGGACAAAATTAATGATGTTATCAACTAGAGTGATGTCTTGACTCTTGATAAACAAAATGTAGCATAGAATGTCCATTTTGGGAAAAATGACAAAAAAGC

Network for GWHGAAZE006133

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01154.18	HMG_CoA_synt_N	3	49	2.50E-12
PF01154.18	HMG_CoA_synt_N	50	74	1.40E-05
PF08540.11	HMG_CoA_synt_C	75	349	5.40E-112

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01641	E2.3.3.10	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Butanoate metabolism	map00650
		Synthesis and degradation of ketone bodies	map00072
		Valine, leucine and isoleucine degradation	map00280
		Terpenoid backbone biosynthesis	map00900
		PPAR signaling pathway	map03320

Gene Ontology

GO term	Ontology	Name
GO:0008299	biological_process	isoprenoid biosynthetic process
GO:0003824	molecular_function	catalytic activity
GO:0004421	molecular_function	hydroxymethylglutaryl-CoA synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.178
	SRR3591706	second leaf	33.905
	SRR3591707	mature leaf	2.209
	SRR3591708	Shoot apex	33.271
	SRR3591709	Stem	0.750
	SRR3591710	White floral bud	18.675
	SRR3591711	White flower	13.005
	SRR3591712	Green floral bud	24.691
	SRR3591713	Yellow flower	0.739
SRP173429	SRR8316895	Juvenile bud stage	23.198
	SRR8316896	Juvenile bud stage	36.379
	SRR8316897	Juvenile bud stage	17.174
	SRR8316894	Third green stage	13.186
	SRR8316900	Third green stage	35.732
	SRR8316901	Third green stage	33.721
	SRR8316898	Complete white stage	2.623
	SRR8316899	Complete white stage	13.037
	SRR8316903	Complete white stage	4.286
	SRR8316902	Silver flowering stage	0.812
	SRR8316904	Silver flowering stage	0.779
	SRR8316905	Silver flowering stage	0.199
	SRR8316906	Gold flowering stage	2.140
	SRR8316907	Gold flowering stage	1.650
	SRR8316908	Gold flowering stage	2.437
SRP132670	SRR6706286	Control	17.382
	SRR6706287	Light intensity 50%	19.923
	SRR6706288	Light intensity 20%	20.633
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	38.830
	CNS0095593	Slightly white alabastrum(diploid) 2	36.587
	CNS0095594	Slightly white alabastrum(diploid) 3	45.203
	CNS0095595	Whole white alabastrum(diploid) 2	27.376
	CNS0095596	Whole white alabastrum(diploid) 3	39.385
	CNS0095597	Whole white alabastrum(diploid) 4	24.157
	CNS0095598	Silvery flower (diploied) 1	17.583
	CNS0095599	Silvery flower (diploied) 2	24.268
	CNS0095600	Silvery flower (diploied) 3	5.190
	CNS0095601	Golden flower (diploid) 1	13.332
	CNS0095602	Golden flower (diploid) 2	7.974
	CNS0095603	Golden flower (diploid) 3	7.932
	CNS0095604	Slightly white alabastrum(tetraploid) 1	50.342
	CNS0095605	Slightly white alabastrum(tetraploid) 2	41.457
	CNS0095606	Slightly white alabastrum(tetraploid) 3	28.158
	CNS0095607	Whole white alabastrum(tetraploid) 1	40.405
	CNS0095608	Whole white alabastrum(tetraploid) 2	25.360
	CNS0095609	Whole white alabastrum(tetraploid) 3	38.601
	CNS0095610	Silvery flower (diploied) 1	1.997
	CNS0095611	Silvery flower (diploied) 2	4.253
	CNS0095612	Silvery flower (diploied) 3	4.244
	CNS0095613	Golden flower (tetraploid) 1	0.952
	CNS0095614	Golden flower (tetraploid) 2	2.306
	CNS0095615	Golden flower (tetraploid) 3	0.332
CRA001975	CRR073297	Stem 1	45.903
	CRR073298	Stem 2	33.807
	CRR073299	Stem 3	46.761
	CRR073300	Leaf 1	34.254
	CRR073301	Leaf 2	34.986
	CRR073302	Leaf 3	45.920
	CRR073303	Juvenile bud 1	31.469
	CRR073304	Juvenile bud 2	21.833
	CRR073305	Juvenile bud 3	22.558
	CRR073306	Third green 1	1.448
	CRR073307	Third green 2	2.067
	CRR073308	Third green 3	2.875
	CRR073309	Second white 1	1.358
	CRR073310	Second white 2	1.362
	CRR073311	Second white 3	0.718
	CRR073312	Silver flowering 1	0.702
	CRR073313	Silver flowering 2	0.260
	CRR073314	Silver flowering 3	0.447
	CRR073315	Gold flowering 1	3.165
	CRR073316	Gold flowering 2	3.824
	CRR073317	Gold flowering 3	3.588
	CRR073318	Tawny withering 1	8.504
	CRR073319	Tawny withering 2	4.732
	CRR073320	Tawny withering 3	15.618