Detail information of GWHGAAZE006148


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDY45969.16.07233E-33BnaA09g12970D [Brassica napus]
Swissprottr|Q9LQ04|RMLCD_ARATH1E-34Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase {ECO:0000305}
trEMBLtr|A0A078I995|A0A078I995_BRANA2E-33BnaA09g12970D protein {ECO:0000313|EMBL:CDY45969.1}
TAIR10AT1G63000.13E-29nucleotide-rhamnose synthase/epimerase-reductase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene2003969420041360-
GWHAAZE00000002mRNA2003969420041360-
GWHAAZE00000002exon2003969420039907-
GWHAAZE00000002exon2004124520041360-
GWHAAZE00000002CDS2004124520041360-
GWHAAZE00000002CDS2003969420039907-
Transcript Sequence

Network for GWHGAAZE006148

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K12451UER1 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Amino sugar and nucleotide sugar metabolismmap00520
Polyketide sugar unit biosynthesismap00523

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.041
SRR3591706second leaf0.914
SRR3591707mature leaf0.135
SRR3591708Shoot apex0.000
SRR3591709Stem0.353
SRR3591710White floral bud0.163
SRR3591711White flower0.347
SRR3591712Green floral bud0.182
SRR3591713Yellow flower0.005
SRP173429 SRR8316895Juvenile bud stage 0.089
SRR8316896Juvenile bud stage 0.323
SRR8316897Juvenile bud stage 0.073
SRR8316894Third green stage 0.254
SRR8316900Third green stage 1.770
SRR8316901Third green stage 0.241
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.435
SRR8316903Complete white stage 0.668
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.220
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.086
SRP132670SRR6706286Control0.000
SRR6706287Light intensity 50%0.104
SRR6706288Light intensity 20%0.000
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.043
CNS0095593Slightly white alabastrum(diploid) 20.083
CNS0095594Slightly white alabastrum(diploid) 30.254
CNS0095595Whole white alabastrum(diploid) 21.978
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.128
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.000
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.000
CNS0095603Golden flower (diploid) 30.000
CNS0095604Slightly white alabastrum(tetraploid) 10.068
CNS0095605Slightly white alabastrum(tetraploid) 20.243
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 10.002
CNS0095608Whole white alabastrum(tetraploid) 20.047
CNS0095609Whole white alabastrum(tetraploid) 30.195
CNS0095610Silvery flower (diploied) 10.000
CNS0095611Silvery flower (diploied) 20.088
CNS0095612Silvery flower (diploied) 30.000
CNS0095613Golden flower (tetraploid) 10.136
CNS0095614Golden flower (tetraploid) 20.019
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.427
CRR073298Stem 21.474
CRR073299Stem 30.097
CRR073300Leaf 10.127
CRR073301Leaf 20.225
CRR073302Leaf 30.204
CRR073303Juvenile bud 10.473
CRR073304Juvenile bud 20.545
CRR073305Juvenile bud 34.225
CRR073306Third green 10.025
CRR073307Third green 20.140
CRR073308Third green 30.106
CRR073309Second white 10.022
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.147
CRR073315Gold flowering 10.136
CRR073316Gold flowering 20.068
CRR073317Gold flowering 30.911
CRR073318Tawny withering 10.099
CRR073319Tawny withering 20.137
CRR073320Tawny withering 30.308