Gene detail

Detail information of GWHGAAZE006163

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP09848.1	1.5716E-137	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9SZ63\|NUD14_ARATH	5E-128	Nudix hydrolase 14, chloroplastic (Precursor)
trEMBL	tr\|A0A068UQG7\|A0A068UQG7_COFCA	6E-138	Coffea canephora DH200=94 genomic scaffold, scaffold_41 {ECO:0000313\|EMBL:CDP09848.1}
TAIR10	AT4G11980.1	1E-102	nudix hydrolase homolog 14

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	20330232	20333612	-
GWHAAZE00000002	mRNA	20330232	20333612	-
GWHAAZE00000002	exon	20333466	20333612	-
GWHAAZE00000002	exon	20331938	20332015	-
GWHAAZE00000002	exon	20331685	20331777	-
GWHAAZE00000002	exon	20331457	20331540	-
GWHAAZE00000002	exon	20330877	20330975	-
GWHAAZE00000002	exon	20330232	20330465	-
GWHAAZE00000002	CDS	20333466	20333612	-
GWHAAZE00000002	CDS	20331938	20332015	-
GWHAAZE00000002	CDS	20331685	20331777	-
GWHAAZE00000002	CDS	20331457	20331540	-
GWHAAZE00000002	CDS	20330877	20330975	-
GWHAAZE00000002	CDS	20330232	20330465	-

Transcript Sequence
>GWHTAAZE006171 ATGGGTCATTCTGATGTTCATGGAACAACTCTGTGGCATAGAAATGCTATAGAATCCTCTTTGTTCCAGCAGTGGTTGAAGAACATCCAAACAGAAACAGGGATTCTTGCTAATGGGGATTTGTCTTTAAACCAAGTACTTATTCAGGGGGTGGATATGTTTGGTAAGCGTGTTGGATTTCTGAAGTTCAAGGCAGATGTTATCGACAAACAAACAGGACAAAAGGTTCCAGGGATTGTTTTTGCAAGAGGACCGGCTGTAGCTGTGCTAATCCTTCTGGAATCTGAAGGAGAGGCTTATGCGGTGCTTACAGAGCAGGTCAGGGTGCCTGTTGGGAAGCTTGTTTTGGAGTTGCCAGCTGGAATGTTGGACGATGACAAGGGTGATATTGTTGGGACGGCAGTTGAAGAGGAGACTGGAATATCCTTGAATCTTGATGATATGGTCAACCTCACAGCTTTTCTAGACCAAACAACTGGCTGTAGAGTTTTTCCGTCTCCGGGAGGGTGCGATGAGGAGATTAGTCTGTTTCTGTACAGAGGAGAAGTGAGTAAAGAGATAATTACTCAACTTCAAGGGAAAGAAACTGGGCTTCGGGAGCATGGGGAACTGATTAAGGTTCATGTAGTTCCCTATAAAAAACTTTGGCGCATGACTGCGGATGCCAAAGCTCTGATGGCCATTGCCTTACATGAAATGGCCAAGAAAGAAGGGCTGCTTCCTCCTAGAAGTTGA

Network for GWHGAAZE006163

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00293.29	NUDIX	83	219	7.70E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18447	NUDX14	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fructose and mannose metabolism	map00051
		Starch and sucrose metabolism	map00500
		Purine metabolism	map00230

Gene Ontology

GO term	Ontology	Name
GO:0016787	molecular_function	hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.066
	SRR3591706	second leaf	10.221
	SRR3591707	mature leaf	8.682
	SRR3591708	Shoot apex	16.105
	SRR3591709	Stem	9.655
	SRR3591710	White floral bud	20.455
	SRR3591711	White flower	16.133
	SRR3591712	Green floral bud	13.292
	SRR3591713	Yellow flower	17.659
SRP173429	SRR8316895	Juvenile bud stage	9.991
	SRR8316896	Juvenile bud stage	14.578
	SRR8316897	Juvenile bud stage	5.603
	SRR8316894	Third green stage	5.565
	SRR8316900	Third green stage	14.794
	SRR8316901	Third green stage	14.673
	SRR8316898	Complete white stage	5.128
	SRR8316899	Complete white stage	15.770
	SRR8316903	Complete white stage	9.347
	SRR8316902	Silver flowering stage	7.839
	SRR8316904	Silver flowering stage	9.496
	SRR8316905	Silver flowering stage	4.398
	SRR8316906	Gold flowering stage	9.238
	SRR8316907	Gold flowering stage	9.813
	SRR8316908	Gold flowering stage	8.619
SRP132670	SRR6706286	Control	15.140
	SRR6706287	Light intensity 50%	15.270
	SRR6706288	Light intensity 20%	15.489
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.312
	CNS0095593	Slightly white alabastrum(diploid) 2	12.867
	CNS0095594	Slightly white alabastrum(diploid) 3	15.520
	CNS0095595	Whole white alabastrum(diploid) 2	11.931
	CNS0095596	Whole white alabastrum(diploid) 3	12.502
	CNS0095597	Whole white alabastrum(diploid) 4	10.478
	CNS0095598	Silvery flower (diploied) 1	14.235
	CNS0095599	Silvery flower (diploied) 2	11.461
	CNS0095600	Silvery flower (diploied) 3	9.856
	CNS0095601	Golden flower (diploid) 1	13.895
	CNS0095602	Golden flower (diploid) 2	10.059
	CNS0095603	Golden flower (diploid) 3	9.713
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.040
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.200
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.312
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.571
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.674
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.872
	CNS0095610	Silvery flower (diploied) 1	17.574
	CNS0095611	Silvery flower (diploied) 2	15.098
	CNS0095612	Silvery flower (diploied) 3	24.577
	CNS0095613	Golden flower (tetraploid) 1	11.505
	CNS0095614	Golden flower (tetraploid) 2	18.494
	CNS0095615	Golden flower (tetraploid) 3	11.082
CRA001975	CRR073297	Stem 1	13.012
	CRR073298	Stem 2	11.632
	CRR073299	Stem 3	11.892
	CRR073300	Leaf 1	15.205
	CRR073301	Leaf 2	13.699
	CRR073302	Leaf 3	13.655
	CRR073303	Juvenile bud 1	12.751
	CRR073304	Juvenile bud 2	13.089
	CRR073305	Juvenile bud 3	10.349
	CRR073306	Third green 1	20.468
	CRR073307	Third green 2	9.046
	CRR073308	Third green 3	13.564
	CRR073309	Second white 1	6.518
	CRR073310	Second white 2	5.153
	CRR073311	Second white 3	4.065
	CRR073312	Silver flowering 1	3.605
	CRR073313	Silver flowering 2	5.851
	CRR073314	Silver flowering 3	5.350
	CRR073315	Gold flowering 1	12.269
	CRR073316	Gold flowering 2	13.953
	CRR073317	Gold flowering 3	12.312
	CRR073318	Tawny withering 1	11.369
	CRR073319	Tawny withering 2	10.511
	CRR073320	Tawny withering 3	7.729