Gene detail

Detail information of GWHGAAZE006283

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AAR37423.1	7.43937E-72	putative ethylene response factor 5 [Vitis aestivalis]
Swissprot	tr\|O80341\|EF102_ARATH	4E-52	Ethylene-responsive transcription factor 5
trEMBL	tr\|Q6RZW7\|Q6RZW7_VITAE	3E-72	Putative ethylene response factor 5 {ECO:0000313\|EMBL:AAR37423.1}
TAIR10	AT5G47230.1	2E-37	ethylene responsive element binding factor 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	22566016	22566831	-
GWHAAZE00000002	mRNA	22566016	22566831	-
GWHAAZE00000002	exon	22566016	22566831	-
GWHAAZE00000002	CDS	22566016	22566831	-

Transcript Sequence
>GWHTAAZE006291 ATGGCCACACAGGACGAAATCTCAGCCCTAGAATTCATCAGACAACACCTCCTCGATGAATTCTCCCCCGTTGACGCATTCTTTACTCATCAACTTGACATCTGTACTTCAAATTCCGCCTCCTCTCAGTCTGATTCTTCGATTTGCTCGCGAACAGATAGTTGTGGATCTGAAATTGTAATCCCTGATTATCTGGACTCGATCGATGAGATATTCGATTTTTCCACTGATATAATCAATTTCAACTTTAATCAAACTCATTATTCCGACGGATTCGAATCAAAACCTCAAGTAATCGACCTAAGGCTCGAGTCCTACTCAAACTCTACATCAAGCTCTCAGTCTAGCCTTAAAGACCGACGGCCTTCGTTGAAGCTCGATTTACCGCCTGGGCGGAAATTCGAGTTGTTAGAATTCGGCGATTCTACTCAGCAGGCAGTAAAAGGTTCGGTACAGAAGGCTATGAAGAAAAAGGACAAAAAGCATTACAGAGGGGTCCGACAGAGGCCTTGGGGCAAGTTTGCGGCGGAGATACGAGATCCTAAACGCCGTGGCTCTAGGGTTTGGCTAGGGACATTCGACACCGCCATTGAGGCCGCTAGAGCTTACGACAAGGCCTCGTTTCAAATGCGCGGAAGTAAAGCAATTCTTAACTTTCCTCTCGAGGTTAGCGCCGCCGTAGAGGGTGGCCGGAAAAGAGGAAGGGGAGAGGGAGATGAAGTTGTTGAGGAGAAGGCGGTGAAGAAGGAGAGATTGTTGGTATCTGAGAAATTGGTGAATGATCAGAGGGCTTGTCCGGTAACACCGTCTAATTAG

Network for GWHGAAZE006283

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	162	212	2.80E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-ERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.725
	SRR3591706	second leaf	0.901
	SRR3591707	mature leaf	0.519
	SRR3591708	Shoot apex	5.581
	SRR3591709	Stem	6.815
	SRR3591710	White floral bud	2.593
	SRR3591711	White flower	2.050
	SRR3591712	Green floral bud	2.034
	SRR3591713	Yellow flower	1.704
SRP173429	SRR8316895	Juvenile bud stage	2.229
	SRR8316896	Juvenile bud stage	1.402
	SRR8316897	Juvenile bud stage	0.233
	SRR8316894	Third green stage	1.472
	SRR8316900	Third green stage	1.495
	SRR8316901	Third green stage	1.492
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	2.752
	SRR8316903	Complete white stage	0.174
	SRR8316902	Silver flowering stage	0.314
	SRR8316904	Silver flowering stage	0.472
	SRR8316905	Silver flowering stage	0.244
	SRR8316906	Gold flowering stage	1.422
	SRR8316907	Gold flowering stage	1.463
	SRR8316908	Gold flowering stage	2.240
SRP132670	SRR6706286	Control	0.583
	SRR6706287	Light intensity 50%	0.595
	SRR6706288	Light intensity 20%	0.408
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.487
	CNS0095593	Slightly white alabastrum(diploid) 2	1.466
	CNS0095594	Slightly white alabastrum(diploid) 3	3.899
	CNS0095595	Whole white alabastrum(diploid) 2	0.647
	CNS0095596	Whole white alabastrum(diploid) 3	0.308
	CNS0095597	Whole white alabastrum(diploid) 4	0.658
	CNS0095598	Silvery flower (diploied) 1	5.643
	CNS0095599	Silvery flower (diploied) 2	0.910
	CNS0095600	Silvery flower (diploied) 3	1.354
	CNS0095601	Golden flower (diploid) 1	6.594
	CNS0095602	Golden flower (diploid) 2	2.531
	CNS0095603	Golden flower (diploid) 3	2.139
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.042
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.582
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.309
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.092
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.063
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (diploied) 1	0.176
	CNS0095611	Silvery flower (diploied) 2	0.091
	CNS0095612	Silvery flower (diploied) 3	0.513
	CNS0095613	Golden flower (tetraploid) 1	0.020
	CNS0095614	Golden flower (tetraploid) 2	0.578
	CNS0095615	Golden flower (tetraploid) 3	0.028
CRA001975	CRR073297	Stem 1	1.535
	CRR073298	Stem 2	3.199
	CRR073299	Stem 3	3.743
	CRR073300	Leaf 1	2.084
	CRR073301	Leaf 2	3.128
	CRR073302	Leaf 3	3.011
	CRR073303	Juvenile bud 1	2.219
	CRR073304	Juvenile bud 2	1.038
	CRR073305	Juvenile bud 3	4.328
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.058
	CRR073308	Third green 3	0.378
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.062
	CRR073311	Second white 3	0.130
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.062
	CRR073315	Gold flowering 1	1.142
	CRR073316	Gold flowering 2	0.479
	CRR073317	Gold flowering 3	0.864
	CRR073318	Tawny withering 1	1.682
	CRR073319	Tawny withering 2	0.009
	CRR073320	Tawny withering 3	1.824